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Integration of biodiversity monitoring data into the Digital Twin Ocean
https://doi.org/10.3030/101112823
https://dto-bioflow.eu

Funder identifier: 101112823 (EU contract id)
Principal funding codes: 3858 - Horizon Europe - Food, Bioeconomy, Natural Resources, Agriculture and Environment
Acronym: DTO - BioFlow
Period: September 2023 till February 2027
Status: In Progress

Thesaurus terms Biodiversity; Biological oceanography; Conservation and biodiversity; Data communications; Database systems and architectures; Modelling and simulation
 Institutes | Publications | Datasets 

Institutes (15)  Top | Publications | Datasets 

Abstract

DTO-BioFlow will activate access to marine biodiversity monitoring data and enable automated data flows from various sources to EMODnet and into the EDITO infrastructure serving the EU DTO. Combining sustained data flows, models and new algorithms, DTO-BioFlow will develop and integrate the biological component of the DTO, including new digital tools and services.


Datasets (58)  Top | Institutes | Publications 
  • Data
    • Anadon R, Lopez Garcia E (2025). Atlantic Meridional Transect cruise AMT13 Microzooplankton (nauplii and copepodites) and mesozooplankton taxonomy and abundance (Net Hauls). British Oceanographic Data Centre. , more
    • Baeyens, R.; Vergeynst, J.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Milotic, T.; Mouton, A.; Pauwels, I.; Pieters, S.; Reyserhove, L.; Robberechts, K.; Verhelst, P.; Coeck, J.; (2020): 2013_ALBERTKANAAL - Acoustic telemetry data for European eel (Anguilla anguilla) and hatched Salmon (Salmo salar) in the Albert canal (Belgium). Marine Data Archive., more
    • Balch W, Bowler B (2025). Atlantic Meridional Transect cruise AMT15 Coccolithophore composition - light microscopy (CTD bottles). British Oceanographic Data Centre. , more
    • Balch W, Bowler B (2025). Atlantic Meridional Transect cruise AMT15 Coccolithophore composition - light microscopy (surface underway). British Oceanographic Data Centre., more
    • Balch W, Drapeau D (2025). Atlantic Meridional Transect cruise AMT16 Coccolithophore composition - light microscopy (CTD bottles). British Oceanographic Data Centre., more
    • Balch W, Drapeau D (2025). Atlantic Meridional Transect cruise JC053 Coccolithophore composition - light microscopy (CTD bottles). British Oceanographic Data Centre., more
    • Balch W, Drapeau D (2025). Atlantic Meridional Transect cruise JC053 Coccolithophore composition - light microscopy (surface underway). British Oceanographic Data Centre., more
    • Balch W, Lyczkowski E (2025). Atlantic Meridional Transect cruise JC039 Coccolithophore composition - light microscopy (CTD bottles). British Oceanographic Data Centre., more
    • Balch W, Lyczkowski E (2025). Atlantic Meridional Transect cruise JC039 Coccolithophore composition - light microscopy (surface underway). British Oceanographic Data Centre., more
    • Buysse, D.; Mouton, A.; Baeyens, R.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Jacobs, Y.; Pauwels, I.; Reyserhove, L.; Coeck, J.; (2020): 2011_RIVIERPRIK - Acoustic telemetry data for river lamprey (Lampetra fluviatilis) in the upper Scheldt river (Belgium). Marine Data Archive., more
    • Dijkstra B, Dillerop R, Oosterbeek K, Bouten W, Desmet P, van der Kolk H, Ens B J (2024). O_ASSEN - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding in Assen (the Netherlands). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Dokter A M, Oosterbeek K, Baptist M J, Desmet P, van der Kolk H, Bouten W, Ens B J (2024). O_BALGZAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) wintering on Balgzand (the Netherlands). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Giordano P, Titocci J, Ingrosso G, Nicolai A, Berra G (2025). Composition and morpho-functional traits of zooplankton swimmers and sinkers collected by "Mooring Dirigibile Italia" sediment trap. Consiglio Nazionale delle Ricerche, Istituto di Scienze Polari. , more
    • González García L, Barata C, Idárraga Garcés V (2025). Whale-Watching cetacean occurrences by Futurismo Azores Adventures from 2008 to 2018 off São Miguel (Azores). Futurismo Azores Adventures., more
    • Hampton P, Fileman E (2025). Atlantic Meridional Transect cruise AMT12 - Microzooplankton abundance and biomass (optical microscopy) (CTD bottles). British Oceanographic Data Centre., more
    • Hampton P, Fileman E (2025). Atlantic Meridional Transect cruise AMT13 - Microzooplankton abundance and biomass (optical microscopy) (CTD bottles). British Oceanographic Data Centre., more
    • Lubinevsky H, Tom M (2025). Macrofauna of the Mediterranean lsraeli deep-sea. Israel Oceanographic and Limnological research. , more
    • Lubinevsky H, Tom M (2025). Macrofauna of the Mediterranean lsraeli shallow shelf-monitoring. Israel Oceanographic and Limnological research., more
    • Lubinevsky H, Tom M (2025). Macrofauna of the eastern Mediterranean lsraeli shelf. Israel Oceanographic and Limnological research., more
    • Montagnes D J S, Wilson D (2025). Marine Productivity programme cruise DI258 - Microzooplankton taxonomic data (CTD and Ocean Sampler). British Oceanographic Data Centre., more
    • Montagnes D J S, Wilson D (2025). Marine Productivity programme cruise DI262 - Microzooplankton taxonomic data (CTD and Ocean Sampler). British Oceanographic Data Centre. , more
    • Montagnes D J S, Wilson D (2025). Marine Productivity programme cruise DI264 - Microzooplankton taxonomic data (CTD and Ocean Sampler). British Oceanographic Data Centre., more
    • Nilsson C, Anton V, Burman E, Germishuys J, Obst M (2025). Koster historical biodiversity assessment. Version 1.10. Wildlife.ai. Occurrence dataset. https://doi.org/10.15468/rzhmef, more
    • Office Français de la Biodiversité ​(OFB), Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in WP2 net (200µm), PNMIR cruises, Parc Naturel Marin d'Iroise, France, more
    • Oosterbeek K, Bom R A, Shamoun-Baranes J, Desmet P, van der Kolk H, Bouten W, Ens B J (2024). O_SCHIERMONNIKOOG - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding on Schiermonnikoog (the Netherlands). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Oosterbeek K, de Jong J, Desmet P, van der Kolk H, Bouten W, Ens B J (2024). O_AMELAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding on Ameland (the Netherlands). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Pauwels, I.; Baeyens, R.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Milotic, T.; Pieters, S.; Reyserhove, L.; Robberechts, K.; Verhelst, P.; Coeck, J.; (2020): 2014_DEMER - Acoustic telemetry data for four fish species in the Demer river (Belgium). Marine Data Archive., more
    • Plymouth Marine Laboratory (2025). The Plymouth Marine Laboratory Bristol Channel Project - Zooplankton and fish taxonomy and abundance. British Oceanographic Data Centre., more
    • Ramalho S, Hilário A, Santos J, Araújo S M, Ramirez-Llodra E, Matos F L (2026). Megafauna composition in Aurora seamount and hydrothermal vent field (High Arctic) identified during the 'HACON expedition 2019' with the RV Kronprins Haakon (cruise no. 2019708). Flanders Marine Institute., more
    • 2010_PHD_REUBENS: Reubens, J.; Degraer, S.; Desmet, P.; Moens, T.; Reyserhove, L.; Vincx, M.; (2020): 2010_PHD_REUBENS - Acoustic telemetry data for Atlantic cod (Gadus morhua) in the C-Power wind farm in the southern North Sea (Belgium). Marine Data Archive., more
    • Sea Watch Foundation non effort-related sightings database. Accessed on –INSERT DATE-, more
    • Sea Watch Foundation non effort-related sightings database. Accessed on –INSERT DATE-, more
    • Skreslet S, Krogstad M, Olsen K (2025). Plankton net data from subarctic fjords in the Norwegian Sea 1980-2005. Nord University., more
    • Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in Bongo net, MOOSE-GE cruises, North-Western Mediterranean Sea., more
    • Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in Juday-Bogorov (330µm) net, Point B, Villefranche-sur-Mer, France, more
    • Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in Régent (680µm) net, Point B, Villefranche-sur-Mer, France, more
    • Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in WP2 net (200µm), DYFAMED point, Ligurian Sea, France, more
    • Sorbonne Université/CNRS - Institut de la Mer de Villefranche (IMEV), Sorbonne Université/CNRS - Laboratoire d'Océanographie de Villefranche (LOV); 2020; Plankton community in WP2 net (200µm), Point B, Villefranche-sur-Mer, France, more
    • Spanoghe G, Janssens K, Milotic T, Desmet P (2024). SPOONBILL_VLAANDEREN - Eurasian spoonbills (Platalea leucorodia, Threskiornithidae) in Flanders (Belgium). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Spanoghe G, Janssens K, Nijs G, Milotic T, Desmet P (2024). CURLEW_VLAANDEREN - Eurasian curlews (Numenius arquata, Scolopacidae) breeding in Flanders (Belgium). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Stichting ANEMOON. ANEMOON Beach washup monitoring (SMP) data along the Dutch coastline collected through citizen science. stichting ANEMOON. , more
    • Stienen E W, Desmet P, Milotic T, Hernandez F, Deneudt K, Bouten W, Müller W, Matheve H, Lens L (2024). LBBG_ZEEBRUGGE - Lesser black-backed gulls (Larus fuscus, Laridae) breeding at the southern North Sea coast (Belgium and the Netherlands). Version 1.2. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Stienen E W, Desmet P, Milotic T, Hernandez F, Deneudt K, Matheve H, Bouten W (2024). HG_OOSTENDE - Herring gulls (Larus argentatus, Laridae) breeding at the southern North Sea coast (Belgium). Version 1.2. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Stienen E W, Desmet P, Milotic T, Spanoghe G, Janssens K (2024). MEDGULL_ANTWERPEN - Mediterranean gulls (Ichthyaetus melanocephalus, Laridae) breeding near Antwerp (Belgium). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Stienen E W, Müller W, Lens L, Milotic T, Desmet P (2024). LBBG_JUVENILE - Juvenile lesser black-backed gulls (Larus fuscus, Laridae) and herring gulls (Larus argentatus, Laridae) hatched in Zeebrugge (Belgium). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Stienen E W, Mülller W, Lens L, Milotic T, Desmet P (2024). LBBG_ADULT - Lesser black-backed gulls (Larus fuscus, Laridae) breeding in Belgium. Version 1.2. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
    • Swedish Meteorological and Hydrological Institute (2024). SHARK - Phyto- and Microzooplankton Data Collected by Imaging FlowCytobots (IFCB) in Swedish and Adjacent Waters., more
    • Tachon M, Austad M, Reiss H, McGovern M, Kokarev V (2025). Grab samples data from subarctic fjords in the Norwegian Sea 2013-2015. Nord University., more
    • Tom M (2025). Cambridge expedition to the Suez canal 1924. Israel Oceanographic and Limnological research. , more
    • Tom M (2025). Epifauna of Haifa Bay, Mediterranean Israeli Shelf-Moshe Tom's collection. Israel Oceanographic and Limnological research., more
    • Tom M (2025). Sponges of the Israeli Mediterranean waters. Israel Oceanographic and Limnological research. , more
    • Verhelst, P.; Buysse, D.; Baeyens, R.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Jacobs, Y.; Milotic, T.; Mouton, A.; Reyserhove, L.; Robberechts, K.; Coeck, J.; (2020): 2012_LEOPOLDKANAAL - Acoustic telemetry data for European eel (Anguilla anguilla) in a polder area in Flanders (Belgium). Marine Data Archive., more
    • Verhelst, P.; Reubens, J.; Coeck, J.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Mouton, A.; Pieters, S.; Reyserhove, L.; Robberechts, K.; Moens, T.; (2020): 2015_PHD_VERHELST_EEL - Acoustic telemetry data for European eel (Anguilla anguilla) in the Scheldt estuary and southern North Sea (Belgium). Marine Data Archive., more
    • Verhelst, P.; Reubens, J.; Desmet, P.; Reyserhove, L.; Moens, T.; (2020): 2015_PHD_VERHELST_COD - Acoustic telemetry data for Atlantic cod (Gadus morhua) in the Scheldt estuary and southern North Sea (Belgium). Marine Data Archive., more
    • Vermeersch, S.; Pauwels, I.; Baeyens, R.; De Maerteleire, N.; Desmet, P.; Gelaude, E.; Milotic, T.; Pieters, S.; Reyserhove, L.; Robberechts, K.; Verhelst, P.; Coeck, J.; (2020): 2015_DIJLE - Acoustic telemetry data for five fish species in the Dijle river (Belgium). Marine Data Archive., more
    • Visser A, Saito H (2025). PROcesses of Vertical Exchange in Shelf Seas cruise D1198 - Meso-zooplankton abundance data. British Oceanographic Data Centre., more
    • van der Kolk H, Oosterbeek K, Jongejans E, Frauendorf M, Allen A M, Bouten W, Desmet P, de Kroon H, Ens B J, van de Pol M (2024). O_VLIELAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding and wintering on Vlieland (the Netherlands). Version 1.1. Research Institute for Nature and Forest (INBO). Occurrence dataset., more
  • Software/models/scripts
    • Boone, W., Deneudt, K., & Muñiz, C. (2026). DTO-BioFlow: DUC 3 Assessing pelagic biodiversity and human impact - Changes in Plankton Communities (zenodo). Zenodo., more

Publications (2)  Top | Institutes | Datasets 
  • Calonge, A.; Develter, R.; Muñiz, C.; Parcerisas, C.; Reubens, J.; Boone, W.; Deneudt, K.; Debusschere, E. (2026). Scalable low-cost seabed landers: The missing link for sustained, integrated, long-term observations in dynamic shallow seas. Remote Sensing in Ecology and Conservation Online first: 1-9. https://dx.doi.org/10.1002/rse2.70072, more
  • Arvanitidis, C.; Ameixa, O.; Basset, A.; Chatzinikolaou, E.; Coman, C.; Companys, B.; De Leo, F.; Deneudt, K.; Drago, F.; Eriksson, J.; Ferrari, T.; Georgiev, T.; Giuliano, G.; Gruber, S.; Habermann, J.; Heil, K.; Hubbard, T.; Huertas Olivares, C.; Kotoulas, G.; Koureas, D.; Manola, N.; Marrocco, V.; Pade, N.; Portugal Melo, A.; Provenzale, A.; Psomopoulos, F.; Raes, N.; Robinson, S.; Ruch, P.; Schaap, D.; Stanica, A.; Stavropoulos, T.; Teixeira, H.; van Tienderen, P.; Tsigenopoulos, C.S.; Waterhouse, R.; Aprea, G.; Boër, M.; Casino, A.; Delauney, L.; Ewbank, J.; Mirtl, M.; Pavlic-Zupanc, J.; Penev, L.; Piera, J.; Pitta, P.; Puillat, I.; Richter, D.; Stepanyan, D.; Ussi, A.; Weslawski, J.; Zuquim, G. (2025). The Crete Declaration: Uniting science for one health. Research Ideas and Outcomes 11: e176120. https://dx.doi.org/10.3897/rio.11.e176120, more

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