Open science resources for the discovery and analysis of Tara Oceans data
Pesant, S.; Tara Oceans Consortium Coordinators; Not, F.; Picheral, M.; Kandels-Lewis, S.; Le Bescot, N.; Gorsky, G.; Iudicone, D.; Karsenti, E.; Speich, S.; Troublè, R.; Dimier, C.; Searson, S. (2015). Open science resources for the discovery and analysis of Tara Oceans data. Scientific Data 2(1). https://dx.doi.org/10.1038/sdata.2015.23
In: Scientific Data. Nature Publishing Group: London. ISSN 2052-4463; e-ISSN 2052-4463, more
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| Authors | | Top | Datasets |
- Pesant, S., more
- Tara Oceans Consortium Coordinators
- Not, F.
- Picheral, M.
- Kandels-Lewis, S.
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- Le Bescot, N.
- Gorsky, G., more
- Iudicone, D.
- Karsenti, E.
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- Speich, S.
- Troublè, R.
- Dimier, C., more
- Searson, S.
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| Abstract |
The Tara Oceans expedition (2009–2013) sampled contrasting ecosystems of the world oceans, collecting environmental data and plankton, from viruses to metazoans, for later analysis using modern sequencing and state-of-the-art imaging technologies. It surveyed 210 ecosystems in 20 biogeographic provinces, collecting over 35,000 samples of seawater and plankton. The interpretation of such an extensive collection of samples in their ecological context requires means to explore, assess and access raw and validated data sets. To address this challenge, the Tara Oceans Consortium offers open science resources, including the use of open access archives for nucleotides (ENA) and for environmental, biogeochemical, taxonomic and morphological data (PANGAEA), and the development of on line discovery tools and collaborative annotation tools for sequences and images. Here, we present an overview of Tara Oceans Data, and we provide detailed registries (data sets) of all campaigns (from port-to-port), stations and sampling events. |
| Datasets (8) |
- Coelho, L.O., Colin, S., Berthelot, H., Santangeli, L., Lombard, F., Carsique, M., Dvorak, E., Pierella, J., Vincent, F., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S., Sunagawa, S., C., Bowler, Bork, P., Pepperkok, R., de Vargas C.,; (2020) Occurrence of Eukaryotes in the size fraction 20-180 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a ring net and analysed by environmental High Content Fluorescence Microscopy (e-HCFM). , more
- Colin, S., Coelho, L.P., Berthelot, H., Soun, C., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S., Sunagawa, S., Bowler, C., Bork, P., Pepperkok, R., de Vargas, C.: (2020) Occurrence of Eukaryotes in the size fraction 5-20 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a ring net and analysed by environmental High Content Fluorescence Microscopy (e-HCFM). , more
- Karp Boss, L., Romagnan, J.B., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S., Irisson, J.O., Lombard, F., Stemmann, L., Gorsky, G.: (2020) Occurrence of Eukaryotes in the size fraction 20-180 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a ring net and analysed with a FlowCam imaging platform., more
- Reynaud, E., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S.: (2020) Occurrence of Eukaryotes in the size fraction 20-180 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a ring net and analysed with a FlowCam imaging platform., more
- Romagnan, J.B., Jalabert, L., Brandao, M., Caray-Counil, L., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, s., Irisson, J.O., Lombard, F., Stemmann, L., Gorsky, G.; (2020) Occurrence of Eukaryotes in the size fraction >680 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Régent net and analysed on a ZooScan imaging platform., more
- Romagnan, J.B., Jalabert, L., Olivier, M., Elineau, A., Brandao, M., Caray-Counil, L., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S., Irisson, J.O., Lombard, F., Stemmann, L., Gorsky, G.; (2020) Occurrence of Eukaryotes in the size fraction >200 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a WPII net and analysed on a ZooScan imaging platform., more
- Sarmento, H., Royo-Llonch, M., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S., G. Acinas, S., M Gasol J.; (2020) Occurrence of Prokaryotes and Eukaryotes in the size fraction <5 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using either Niskin bottles or a large volume peristaltic pump and analysed by flow cytometry. , more
- Scalco, E., Sarno, D., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S., Bowler, C., Zingone, A.; (2020) Occurrence of Eukaryotes in the size fraction 20-180 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a ring net and analysed by inverted light microscopy., more
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