Balans der heterotrofe en autotrofe processen in het schelde estuarium en impact op de koolstof- en stikstof-stromen
Biogas transfer in Estuaries
Biogeochemische cycli in open oceanen, kustzeeën en estuaria
Biogeochemische processen in estuariene systemen
COastal SAnds as Biocatalytical Filters
De functionele rol van het mariene macrobenthos in het metabolisme van de zeebodem.
De functionele rol van nematoden en foraminiferen in het benthische metabolisme
De rol van zoetwaterschorren in de vastlegging en omzettingen van stikstof in estuaria : een ecosysteem 15N labelings studie
Koolstof en stikstof cycli in de Westerschelde
Koolstof en stikstof cycli in de Westerschelde : het ontwikkelen van een geïntegreerde visie en de identificatie van de belangrijkste organismen in die cycli
Koolstof- en stikstofcycli in het Schelde-estuarium: naar een geïntegreerde visie en een identificatie van de belangrijke spelers
Nutrients Cycling and the Trophic Status of Coastal Ecosystems
The development of early diagenetic models
Understanding benthic, pelagic and air-borne ecosystem interactions in shallow coastal seas, meer
Voedsel, zuurstof en bioturbatie: een experimentele studie van de structuur van meiofaunagemeenschappen
Zoetwaterschorren als "sinks" voor stikstof: dynamiek van het benthische compartiment en het onderzoek naar hun rol in estuariene stikstofretentie
van de Mortel, H.; Delaigue, L.; Humphreys, M.P.; Middelburg, J.J; Ossebaar, S.; Bakker, K.; Alexandre, J.P.T.; van Leeuwen-Tolboom, A.W.E.; Wolthers, M.; Sulpis, O. (2024). Laboratory observation of the buffering effect of aragonite dissolution at the seafloor. JGR: Biogeosciences 129(2): e2023JG007581. https://dx.doi.org/10.1029/2023jg007581
Wang, C.; Qiu, Y.; Hao, Z.; Wang, J.; Zhang, C.; Middelburg, J.J.; Wang, Y.; Zou, X. (2024). Global patterns of organic carbon transfer and accumulation across the land–ocean continuum constrained by radiocarbon data. Nature Geoscience 17(8): 778-786. https://dx.doi.org/10.1038/s41561-024-01476-4
Cramwinckel, M.J.; van der Ploeg, R.; van Helmond, N.A.G.M.; Waarlo, N.; Agnini, C.; Bijl, P.K.; van der Boon, A.; Brinkhuis, H.; Frieling, J.; Krijgsman, W.; Mather, T.A.; Middelburg, J.J.; Peterse, F.; Slomp, C.P.; Sluijs, A. (2023). Deoxygenation and organic carbon sequestration in the Tethyan realm associated with the middle Eocene climatic optimum. Geol. Soc. Am. Bull. 135(5-6): 1280-1296. https://dx.doi.org/10.1130/b36280.1
van der Ploeg, R.; Cramwinckel, M.J.; Kocken, I.J.; Leutert, T.J.; Bohaty, S.M.; Fokkema, C.D.; Hull, P.M.; Meckler, A.N.; Middelburg, J.; Müller, I.A.; Penman, D.E.; Peterse, F; Reichart, G.-J.; Sexton, P.F.; Vahlenkamp, M.; De Vleeschouwer, D.; Wilson, P.A.; Ziegler, M.; Sluijs, A. (2023). North Atlantic surface ocean warming and salinization in response to middle Eocene greenhouse warming. Science Advances 9(4): eabq0110. https://dx.doi.org/10.1126/sciadv.abq0110
Epstein, G.; Middelburg, J.J.; Hawkins, J.P.; Norris, C.R.; Roberts, C. M. (2022). The impact of mobile demersal fishing on carbon storage in seabed sediments. Glob. Chang. Biol. 28(9): 2875-2894. https://dx.doi.org/10.1111/gcb.16105
Geerken, E.; de Nooijer, L.J.; Toyofuku, T.; Roepert, A.; Middelburg, J.J.; Kienhuis, M.V.M.; Nagai, Y.; Polerecky, L.; Reichart, G.-J. (2022). High precipitation rates characterize biomineralization in the benthic foraminifer Ammonia beccarii. Geochim. Cosmochim. Acta 318: 70-82. https://dx.doi.org/10.1016/j.gca.2021.11.026
Geerken, E.; de Nooijer, L.; Toyofuku, T.; Roepert, A.; Middelburg, J.J.; Kienhuis, M.V.M.; Nagai, Y.; Polerecky, L.; Reichart, G.-J. (2022). High precipitation rates characterize biomineralization in the benthic foraminifer Ammonia beccarii. Geochim. Cosmochim. Acta 318: 70-82. https://dx.doi.org/10.1016/j.gca.2021.11.026
Hanz, U.; Riekenberg, P.M.; de Kluijver, A.; van der Meer, M.T.J.; Middelburg, J.J.; de Goeij, J.M.; Bart, M.C.; Wurz, E.; Colaço, A.; Duineveld, G.C.A.; Reichart, G.-J.; Rapp, H.T.; Mienis, F. (2022). The important role of sponges in carbon and nitrogen cycling in a deep-sea biological hotspot. Funct. Ecol. 36(9): 2188-2199. https://dx.doi.org/10.1111/1365-2435.14117
Hülse, D.; Vervoort, P.; van de Velde, S.J.; Kanzaki, Y.; Boudreau, B.; Arndt, S.; Bottjer, D.J.; Hoogakker, B.; Kuderer, M.; Middelburg, J.J.; Volkenborn, N.; Turner, S.K.; Ridgwell, A. (2022). Assessing the impact of bioturbation on sedimentary isotopic records through numerical models. Earth-Sci. Rev. 234: 104213. https://dx.doi.org/10.1016/j.earscirev.2022.104213
Sulpis, O.; Agrawal, P.; Wolthers, M.; Munhoven, G.; Walker, M.; Middelburg, J. (2022). Aragonite dissolution protects calcite at the seafloor. Nature Comm. 13(1): 1104. https://dx.doi.org/10.1038/s41467-022-28711-z
Sulpis, O.; Humphreys, M.P.; Wilhelmus, M.M.; Carroll, D.; Berelson, W.M.; Menemenlis, D.; Middelburg, J.J.; Adkins, J.F. (2022). RADIv1: a non-steady-state early diagenetic model for ocean sediments in Julia and MATLAB/GNU Octave. Geosci. Model Dev. 15(5): 2105-2131. https://dx.doi.org/10.5194/gmd-15-2105-2022
Bianchi, T.S.; Aller, R.C.; Atwood, T.B.; Brown, C.J.; Buatois, L.A.; Levin, L.A.; Levinton, J.S.; Middelburg, J.J.; Morrison, E.S.; Regnier, P.; Shields, M.R.; Snelgrove, P.V.R.; Sotka, E.E.; Stanley, R.R.E. (2021). What global biogeochemical consequences will marine animal-sediment interactions have during climate change? Elem. Sci. Anth. 9(1): 25. https://dx.doi.org/10.1525/elementa.2020.00180
de Kluijver, A.; Bart, M.C.; van Oevelen, D.; de Goeij, J.M.; Leys, S.P.; Maier, S.R.; Maldonado, M.; Soetaert, K.; Verbiest, S.; Middelburg, J.J. (2021). An integrative model of carbon and nitrogen metabolism in a common deep-sea sponge (Geodia barretti). Front. Mar. Sci. 7: 596251. https://dx.doi.org/10.3389/fmars.2020.596251
de Kluijver, A.; Nierop, K.G.J.; Morganti, T.M.; Bart, M.C.; Slaby, B.M.; Hanz, U.; de Goeij, J.M.; Mienis, F.; Middelburg, J.J. (2021). Bacterial precursors and unsaturated long-chain fatty acids are biomarkers of North-Atlantic deep-sea demosponges. PLoS One 16: e0241095. https://doi.org/10.1371/journal.pone.0241095
Jacques, C.; Gkritzalis, T.; Tison, J.-L.; Hartley, T.; van der Veen, C.; Röckmann, T.; Middelburg, J.J.; Cattrijsse, A.; Egger, M.; Dehairs, F.; Sapart, C.J. (2021). Carbon and hydrogen isotope signatures of dissolved methane in the Scheldt Estuary. Est. Coast. 44(1): 137–146. https://dx.doi.org/10.1007/s12237-020-00768-3
Riekenberg, P.M.; Camalich, J.; Svensson, E.; IJsseldijk, L.L.; Brasseur, S.M.; Witbaard, R.; Leopold, M.F.; Rebolledo, E.B.; Middelburg, J.J.; Van der Meer, M.T.J.; Sinninghe Damsté, J.S.; Schouten, S. (2021). Reconstructing the diet, trophic level and migration pattern of mysticete whales based on baleen isotopic composition. Royal Society Open Science 8(12): 210949. https://dx.doi.org/10.1098/rsos.210949
Geerlings, N.M.J.; Karman, C.; Trashin, S.; As, K.S.; Kienhuis, M.V.M.; Hidalgo-Martinez, S.; Vasquez-Cardenas, D.; Boschker, H.T.S.; De Wael, K.; Middelburg, J.J.; Polerecky, L.; Meysman, F.J.R. (2020). Division of labor and growth during electrical cooperation in multicellular cable bacteria. Proc. Natl. Acad. Sci. U.S.A. 117(10): 5478-5485. https://dx.doi.org/10.1073/pnas.1916244117
Grothe, A.; Andreetto; Reichart, G.-J.; Wolthers, M.; Van Baak; Vasiliev, I.; Stoica, M.; Sangiorgi, F.; Middelburg, J.J.; Davies, G.R.; Krijgsman, W. (2020). Paratethys pacing of the Messinian Salinity Crisis: Low salinity waters contributing to gypsum precipitation? Earth Planet. Sci. Lett. 532: 116029. https://dx.doi.org/10.1016/j.epsl.2019.116029
Middelburg, J.J.; Soetaert, K.; Hagens, M. (2020). Ocean alkalinity, buffering and biogeochemical processes. Rev. Geophys. 58(3): e2019RG000681. https://doi.org/10.1029/2019rg000681
Roepert, A.; Polerecky, L.; Geerken, E.; Reichart, G.-J.; Middelburg, J. (2020). Distribution of chlorine and fluorine in benthic foraminifera. Biogeosciences 17(18): 4727-4743. https://doi.org/10.5194/bg-17-4727-2020
Tan, E.; Zou, W.; Zheng, Z.; Yan, X.; Du, M.; Hsu, T.-C.; Tian, L.; Middelburg, J.J.; Trull, W; Kao, S.-J. (2020). Warming stimulates sediment denitrification at the expense of anaerobic ammonium oxidation. Nat. Clim. Chang. 10(4): 349-355. https://dx.doi.org/10.1038/s41558-020-0723-2
Cramwinckel, M.J.; van der Ploeg, R.; Bijl, P.K.; Peterse, F; Bohaty, S.M.; Röhl, U.; Schouten, S.; Middelburg, J.J.; Sluijs, A. (2019). Harmful algae and export production collapse in the equatorial Atlantic during the zenith of Middle Eocene Climatic Optimum warmth. Geology (Boulder Colo.) 47(3): 247-250. https://doi.org/10.1130/G45614.1
Geerlings, N.M.J.; Zetsche, E.M.; Hidalgo-Martinez, S.; Middelburg, J.J.; Meysman, F.J.R. (2019). Mineral formation induced by cable bacteria performing long-distance electron transport in marine sediments. Biogeosciences 16(3): 811-829. https://hdl.handle.net/10.5194/bg-16-811-2019
Lengger, S.K.; Rush, D.; Mayser, J.P.; Blewett, J.; Schwartz-Narbonne, R.; Talbot, H.M.; Middelburg, J.J.; Jetten, M.S.M.; Schouten, S.; Sinninghe Damsté, J.S. (2019). Dark carbon fixation in the Arabian Sea oxygen minimum zone contributes to sedimentary organic carbon (SOM). Global Biogeochem. Cycles 33(12): 1715-1732. https://dx.doi.org/10.1029/2019gb006282
Weiss, G.M.; Roepert, A.; Middelburg, J.J.; Schouten, S.; Sinninghe Damsté, J.S; van der Meer, M.T.J. (2019). Hydrogen isotope fractionation response to salinity and alkalinity in a calcifying strain of Emiliania huxleyi. Org. Geochem. 134: 62-65. https://dx.doi.org/10.1016/j.orggeochem.2019.06.001
Boudreau, B.P.; Middelburg, J.J.; Luo, Y. (2018). The role of calcification in carbonate compensation. Nature Geoscience 11(12): 894-900. https://dx.doi.org/10.1038/s41561-018-0259-5
Frieling, J.; Reichart, G.-J.; Middelburg, J.J.; Röhl, U.; Westerhold, T.; Bohaty, S.M.; Sluijs, A. (2018). Tropical Atlantic climate and ecosystem regime shifts during the Paleocene–Eocene Thermal Maximum. Clim. Past 14(1): 39-55. https://dx.doi.org/10.5194/cp-14-39-2018
Lessin, G.; Artioli, Y.; Almroth-Rosell, E.; Blackford, J.C.; Dale, A. W.; Glud, R.N.; Middelburg, J.J.; Pastres, R.; Queirós, A.M.; Rabouille, C.; Regnier, P.; Soetaert, K.; Solidoro, C.; Stephens, N.; Yakushev, E. (2018). Modelling marine sediment biogeochemistry: current knowledge gaps, challenges, and some methodological advice for advancement. Front. Mar. Sci. 5: 19. https://doi.org/10.3389/fmars.2018.00019
Sulu-Gambari, F; Hagens, M.; Behrends, T; Seitaj, D.; Meysman, F.J.R.; Middelburg, J.; Slomp, C.P. (2018). Phosphorus cycling and burial in sediments of a seasonally hypoxic marine basin. Est. Coast. 41(4): 921–939. https://dx.doi.org/10.1007/s12237-017-0324-0
van Bree, L.G.J.; Peterse, F.; van der Meer, M.T.J.; Middelburg, J.J.; Negash, A.M.D.; De Crop, W.; Cocquyt, C.; Wieringa, J.J.; Verschuren, D.; Sinninghe Damsté, J.S. (2018). Seasonal variability in the abundance and stable carbon-isotopic composition of lipid biomarkers in suspended particulate matter from a stratified equatorial lake (Lake Chala, Kenya/Tanzania): Implications for the sedimentary record. Quat. Sci. Rev. 192: 208-224. https://doi.org/10.1016/j.quascirev.2018.05.023
Van Oevelen, D.; Mueller, C.E.; Lundälv, T.; van Duyl, F.C.; de Goeij, J.M.; Middelburg, J.J. (2018). Niche overlap between a cold-water coral and an associated sponge for isotopically-enriched particulate food sources. PLoS One 13(3): e0194659. https://dx.doi.org/10.1371/journal.pone.0194659
Christianen, M.J.A.; Middelburg, J.J.; Holthuijsen, S.J.; Jouta, J.; Compton, T.J.; van der Heide, T.; Piersma, T.; Sinninghe Damsté, J.S.; van der Veer, H.W.; Schouten, S.; Olff, H. (2017). Benthic primary producers are key to sustain the Wadden Sea food web: stable carbon isotope analysis at landscape scale. Ecology 98(6): 1498-1512. https://dx.doi.org/10.1002/ecy.1837
Frieling, J.; Gebhardt, H.; Huber, M.; Adekeye, O.A.; Akande, S.O.; Reichart, G.-J.; Middelburg, J.J.; Schouten, S.; Sluijs, A. (2017). Extreme warmth and heat-stressed plankton in the tropics during the Paleocene-Eocene Thermal Maximum. Science Advances 3(3): e1600891. https://dx.doi.org/10.1126/sciadv.1600891
Holding, J.M.; Duarte, C.M.; Delgado-Huertas, A.; Soetaert, K.; Vonk, J.E.; Agusti, S.; Wassmann, P.; Middelburg, J. (2017). Autochthonous and allochthonous contributions of organic carbon to microbial food webs in Svalbard fjords. Limnol. Oceanogr. 62(3): 1307-1323. https://dx.doi.org/10.1002/lno.10526
Lammers, J.M.; Schubert, C.J.; Middelburg, J.J.; Reichart, G.J. (2017). Microbial carbon processing in oligotrophic Lake Lucerne (Switzerland): results of in situ 13C-labelling studies. Biogeochemistry 136(2): 131-149. https://dx.doi.org/10.1007/s10533-017-0389-7
Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2017). A seasonal study of particulate organic matter composition and quality along an offshore transect in the southern North Sea. Est., Coast. and Shelf Sci. 188: 1-11. https://dx.doi.org/10.1016/j.ecss.2017.02.002
Maugendre, L.; Gattuso, J.-P.; de Kluijver, A.; Soetaert, K.; van Oevelen, D.; Middelburg, J.J.; Gazeau, F. (2017). Carbon-13 labelling shows no effect of ocean acidification on carbon transfer in Mediterranean plankton communities. Est., Coast. and Shelf Sci. 186(Part A): 100-111. dx.doi.org/10.1016/j.ecss.2015.12.018
Morales, C.; Rogov, M.; Wierzbowski, H.; Ershova, V.; Suan, G; Adatte, T.; Föllmi, K.B.; Tegelaar, E.; Reichart, G.-J.; de Lange, G.J.; Middelburg, J.J.; van de Schootbrugge, B. (2017). Glendonites track methane seepage in Mesozoic polar seas. Geology (Boulder Colo.) 45(6): 503-506. https://doi.org/10.1130/G38967.1
Brouwer, G.M.; Duijnstee, I.A.P.; Hazeleger, J.H.; Rossi, F.; Lourens, L.J.; Middelburg, J.J; Wolthers, M. (2016). Diet shifts and population dynamics of estuarine foraminifera during ecosystem recovery after experimentally induced hypoxia crises. Est., Coast. and Shelf Sci. 170: 20-33. dx.doi.org/10.1016/j.ecss.2015.12.015
Svensson, E.; Schouten, S.; Hopmans, E.C.; Middelburg, J.J.; Sinninghe Damsté, J.S. (2016). Factors Controlling the Stable Nitrogen Isotopic Composition (d15N) of Lipids in Marine Animals. PLoS One 11(1): e0146321. https://dx.doi.org/10.1371/journal.pone.0146321
Tadonléké, R.D.; Pollet, T.; van Rijswijk, P.; Leberre, B.; Middelburg, J.J. (2016). Effects of oxygen loss on carbon processing and heterotrophic prokaryotes from an estuarine ecosystem: results from stable isotope probing and cytometry analyses. Est. Coast. 39(4): 992-1005. http://dx.doi.org/10.1007/s12237-015-0053-1
Van Oevelen, D.; Mueller, C.E.; Lundälv, T.; Middelburg, J.J. (2016). Food selectivity and processing by the cold-water coral Lophelia pertusa. Biogeosciences 13: 5789–5798. https://dx.doi.org/10.5194/bg-13-5789-2016
Woulds, C.; Bouillon, S.; Cowie, G.L.; Drake, E.; Middelburg, J.J.; Witte, U. (2016). Patterns of carbon processing at the seafloor: the role of faunal and microbial communities in moderating carbon flows. Biogeosciences 13(15): 4343-4357. https://dx.doi.org/10.5194/bg-13-4343-2016
Braeckman, U.; Provoost, P.; Sabbe, K.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2015). Temporal dynamics in a shallow coastal benthic food web: Insights from fatty acid biomarkers and their stable isotopes. Mar. Environ. Res. 108: 55-68. http://dx.doi.org/10.1016/j.marenvres.2015.04.010
Brouwer, M.G.M.; Wolthers, M.; Hazeleger, J.H.; Rossi, F; Lourens, L.J.; Middelburg, J.J.; Duijnstee, I.A.P. (2015). Differential response of intertidal Foraminifera to community recovery following experimentally induced hypoxia. Journal of Foraminiferal Research 45(3): 220-234. http://dx.doi.org/10.2113/gsjfr.45.3.220
de Kluijver, A.; Ning, J.; Liu, Z.; Jeppesen, E.; Gulati, R.D.; Middelburg, J.J. (2015). Macrophytes and periphyton carbon subsidies to bacterioplankton and zooplankton in a shallow eutrophic lake in tropical China. Limnol. Oceanogr. 60: 375-385. dx.doi.org/10.1002/lno.10040
Hagens, M.; Slomp, C.P.; Meysman, F.J.R.; Seitaj, D.; Harlay, J.; Borges, A.V.; Middelburg, J.J. (2015). Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin. Biogeosciences 12(5): 1561-1583. dx.doi.org/10.5194/bg-12-1561-2015
Kim, J.H.; Schouten, S.; Rodrigo-Gámiz, M.; Rampen, S.W.; Marino, G.; Huguet, C.; Helmke, P.; Buscail, R.; Hopmans, E.C.; Pross, J.; Sangiorgi, F.; Middelburg, J.; Sinninghe Damsté, J.S. (2015). Influence of deep-water derived isoprenoid tetraether lipids on the TEX h86 paleothermometer in the Mediterranean Sea. Geochim. Cosmochim. Acta 150: 125–141. dx.doi.org/10.1016/j.gca.2014.11.017
Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2015). Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach. Est., Coast. and Shelf Sci. 165: 117-127. https://dx.doi.org/10.1016/j.ecss.2015.09.010
Vasquez-Cardenas, D.; van de Vossenberg, J.; Polerecky, L.; Malkin, S.Y.; Schauer, R.; Hidalgo-Martinez, S.; Confurius-Guns, V.; Middelburg, J.J.; Meysman, F.J.R.; Boschker, H.T.S. (2015). Microbial carbon metabolism associated with electrogenic sulphur oxidation in coastal sediments. ISME J. 9(9): 1966-1978. dx.doi.org/10.1038/ismej.2015.10
de Kluijver, A.; Schoon, P.L.; Downing, J.A.; Schouten, S.; Middelburg, J.J. (2014). Stable carbon isotope biogeochemistry of lakes along a trophic gradient. Biogeosciences 11: 6265– 6276. dx.doi.org/10.5194/bg-11-6265-2014
Gazeau, F.; van Rijswijk, P.; Pozzato, L.; Middelburg, J.J. (2014). Impacts of Ocean Acidification on Sediment Processes in Shallow Waters of the Arctic Ocean. PLoS One 9(4): e94068. dx.doi.org/10.1371/journal.pone.0094068
Moneta, A.; Veuger, B.; van Rijswijk, P.; Meysman, F; Soetaert, K.; Middelburg, J.J. (2014). Dissolved inorganic and organic nitrogen uptake in the coastal North Sea: a seasonal study. Est., Coast. and Shelf Sci. 147: 78-86. http://dx.doi.org/10.1016/j.ecss.2014.05.022
Mueller, C.E.; Larsson, A.I.; Veuger, B.; Middelburg, J.J.; van Oevelen, D. (2014). Opportunistic feeding on various organic food sources by the cold-water coral Lophelia pertusa. Biogeosciences 11(1): 123-133. dx.doi.org/10.5194/bg-11-123-2014
Svensson, E.; Freitas, V.; Schouten, S.; Middelburg, J.J.; van der Veer, H.W.; Sinninghe Damsté, J.S. (2014). Comparison of the stable carbon and nitrogen isotopic values of gill and white muscle tissue of fish. J. Exp. Mar. Biol. Ecol. 457: 173-179. dx.doi.org/10.1016/j.jembe.2014.04.014
Woulds, C.; Middelburg, J.J.; Cowie, G.L. (2014). Alteration of organic matter during infaunal polychaete gut passage and links to sediment organic geochemistry. Part II: Fatty acids and aldoses. Geochim. Cosmochim. Acta 136: 38-59. dx.doi.org/10.1016/j.gca.2014.02.013
Adams Krumins, J.; van Oevelen, D.; Bezemer, T.M.; de Deyn, G.B.; Hol, W.H.G.; van Donk, E.; de Boer, W.; de Ruiter, P.C.; Middelburg, J.J.; Monroy, F.; Soetaert, K.; Thébault, E.; van de Koppel, J.; van Veen, J.A.; Viketoft, M.; van der Putten, W.H. (2013). Soil and Freshwater and Marine Sediment Food Webs: Their Structure and Function. BioScience 63(1): 35-42. dx.doi.org/10.1525/bio.2013.63.1.8
de Goeij, J.M.; van Oevelen, D.; Vermeij, M.J.A.; Osinga , R.; Middelburg, J.J.; de Goeij, A.F.P.M.; Admiraal, W. (2013). Surviving in a marine desert: The sponge loop retains resources within coral reefs. Science (Wash.) 342(6154): 108-110. http://dx.doi.org/10.1126/science.1241981
de Kluijver, A.; Soetaert, K.; Czerny, J.; Schulz, K.G.; Boxhammer, T.; Riebesell, U.; Middelburg, J.J. (2013). A 13C labelling study on carbon fluxes in Arctic plankton communities under elevated CO2 levels. Biogeosciences 10(3): 1425-1440. dx.doi.org/10.5194/bg-10-1425-2013
Kürten, B.; Painting, S.J.; Struck , U.; Polunin, N.V.C.; Middelburg, J.J. (2013). Tracking seasonal changes in North Sea zooplankton trophic dynamics using stable isotopes. Biogeochemistry 113(1-3): 167-187. dx.doi.org/10.1007/s10533-011-9630-y
Kürten, B.; Frutos, I.; Struck, U.; Painting, S.J.; Polunin, N.V.C.; Middelburg, J.J. (2013). Trophodynamics and functional feeding groups of North Sea fauna: a combined stable isotope and fatty acid approach. Biogeochemistry 113(1-3): 189-212. dx.doi.org/10.1007/s10533-012-9701-8
Morris, E.P.; Peralta, G.; Van Engeland, T.; Bouma, T.J.; Brun, F.G.; Lara, M.; Hendriks, I.E.; Benavente, J.; Soetaert, K.; Middelburg, J.J.; Perez-Llorens, J.L. (2013). The role of hydrodynamics in structuring in situ ammonium uptake within a submerged macrophyte community. Limnol. Oceanogr. 3: 210-224. http://dx.doi.org/10.1215/21573689-2397024
Mueller, C.E.; Lundälv, T.; Middelburg, J.J.; van Oevelen, D. (2013). The Symbiosis between Lophelia pertusa and Eunice norvegica Stimulates Coral Calcification and Worm Assimilation. PLoS One 8(3). dx.doi.org/10.1371/journal.pone.0058660
Pozzato, L.; van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J. (2013). Carbon processing at the deep-sea floor of the Arabian Sea oxygen minimum zone: A tracer approach. J. Sea Res. 78: 45-58. dx.doi.org/10.1016/j.seares.2013.01.002
Pozzato, L.; van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J (2013). Sink or link? The bacterial role in benthic carbon cycling in the Arabian Sea's oxygen minimum zone. Biogeosciences 10: 6879-6891. http://dx.doi.org/10.5194/bg-10-6879-2013
Provoost, P.; Braeckman, U.; Van Gansbeke, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J.; Vanaverbeke, J. (2013). Modelling benthic oxygen consumption and benthic-pelagic coupling at a shallow station in the southern North Sea. Est., Coast. and Shelf Sci. 120: 1-11. http://dx.doi.org/10.1016/j.ecss.2013.01.008
Rossi, F.; Gribsholt, B.; Gazeau, F.; Di Santo, V.; Middelburg, J.J. (2013). Complex Effects of Ecosystem Engineer Loss on Benthic Ecosystem Response to Detrital Macroalgae. PLoS One 8(6)
Schoon, P.L.; de Kluijver, A.; Middelburg, J.J.; Downing, J.A.; Sinninghe Damsté, J.S.; Schouten, S. (2013). Influence of lake water pH and alkalinity on the distribution of coreand intact polar branched glycerol dialkyl glycerol tetraethers (GDGTs) in lakes. Org. Geochem. 60: 72-82. dx.doi.org/10.1016/j.orggeochem.2013.04.015
van Duinen, G.A.; Vermonden, K.; Bodelier, P.L.E.; Hendriks, A.J.; Leuven, R.S.E.W.; Middelburg, J.J.; van der Velde, G.; Verberk, W.C.E.P. (2013). Methane as a carbon source for the food web in raised bog pools. Freshwater Science 32(4): 1260–1272. https://dx.doi.org/10.1899/12-121.1
Van Engeland, T.; Bouma, T.J.; Morris, E.P.; Brun, F.G.; Peralta, G.; Lara, M.; Hendriks, I.E.; van Rijswijk, P.; Veuger, B.; Soetaert, K.; Middelburg, J.J. (2013). Dissolved organic matter uptake in a temperate seagrass ecosystem. Mar. Ecol. Prog. Ser. 478: 87-100. dx.doi.org/10.3354/meps10183
Veuger, B.; Pitcher, A.; Schouten, S.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2013). Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea. Biogeosciences 10(3): 1775-1785. dx.doi.org/10.5194/bg-10-1775-2013
Braeckman, U.; Provoost, P.; Sabbe, K.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2012). Temporal dynamics in the diet of two marine polychaetes as inferred from fatty acid biomarkers. J. Sea Res. 68: 6-19. dx.doi.org/10.1016/j.seares.2011.11.003
Dähnke, K.; Moneta, A.; Veuger, B.; Soetaert, K.; Middelburg, J.J. (2012). Balance of assimilative and dissimilative nitrogen processes in a diatom-rich tidal flat sediment. Biogeosciences 9(10): 4059-4070. http://dx.doi.org/10.5194/bg-9-4059-2012
de Kluijver, A.; Yu, J.L.; Houtekamer, M.; Middelburg, J.J.; Liu, Z.W. (2012). Cyanobacteria as a carbon source for zooplankton in eutrophic Lake Taihu, China, measured by 13C labeling and fatty acid biomarkers. Limnol. Oceanogr. 57(4): 1245-1254. dx.doi.org/10.4319/lo.2012.57.4.1245
Downing, J.A.; Cole, J.J.; Duarte, C.M.; Middelburg, J.J.; Melack, J.M.; Prairie, Y.T.; Kortelainen, P.; Striegl, R.G.; McDowell, W.H.; Tranvik, L.J. (2012). Global abundance and size distribution of streams and rivers. Inland Waters 2(4): 229-236. dx.doi.org/10.5268/IW-2.4.502
Evrard, V.; Huettel, M.; Cook, P.L.M.; Soetaert, K.; Heip, C.H.R.; Middelburg, J.J. (2012). Importance of phytodetritus and microphytobenthos for heterotrophs in a shallow subtidal sandy sediment. Mar. Ecol. Prog. Ser. 455: 13-31. dx.doi.org/10.3354/meps09676
Oakes, J.M.; Eyre, B.D.; Middelburg, J.J. (2012). Transformation and fate of microphytobenthos carbon in subtropical shallow subtidal sands: A 13C-labeling study. Limnol. Oceanogr. 57(6): 1846-1856. dx.doi.org/10.4319/lo.2012.57.6.1846
Pedrotti, M.L.; Fiorini, S.; Kerros, M.E.; Middelburg, J.J.; Gattuso, J.P. (2012). Variable production of transparent exopolymeric particles by haploid and diploid life stages of coccolithophores grown under different CO2 concentrations. J. Plankton Res. 34(5): 388-398. dx.doi.org/10.1093/plankt/fbs012
Van Colen, C.; Rossi, F.; Montserrat, F.; Andersson, M.G.I.; Gribsholt, B.; Herman, P.M.J.; Degraer, S.; Vincx, M.; Ysebaert, T.; Middelburg, J.J,. (2012). Organism-sediment interactions govern post-hypoxia recovery of ecosystem functioning. PLoS One 7(11): e49795. http://dx.doi.org/10.1371/journal.pone.0049795
Veuger, B.; van Oevelen, D.; Middelburg, J.J. (2012). Fate of microbial nitrogen, carbon, hydrolysable amino acids, monosaccharides, and fatty acids in sediment. Geochim. Cosmochim. Acta 83: 217-233. https://dx.doi.org/10.1016/j.gca.2011.12.016
Woulds, C.; Middelburg, J.J.; Cowie, G.L. (2012). Alteration of organic matter during infaunal polychaete gut passage and links to sediment organic geochemistry. Part I: Amino acids. Geochim. Cosmochim. Acta 77: 396-414. dx.doi.org/10.1016/j.gca.2011.10.042
Braeckman, U.; Provoost, P.; Moens, T.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2011). Biological vs. physical mixing effects on benthic food web dynamics. PLoS One 6(3): e18078. dx.doi.org/10.1371/journal.pone.0018078
Gazeau, F.; Gattuso, J.P.; Greaves, M.; Elderfield, H.; Peene, J.; Heip, C.H.R.; Middelburg, J.J. (2011). Effect of Carbonate Chemistry Alteration on the Early Embryonic Development of the Pacific Oyster (Crassostrea gigas). PLoS One 6(8): e23010; 1-8. dx.doi.org/10.1371/journal.pone.0023010
Moodley, L.; Nigam, R.; Ingole, B.; Babu, C.P.; Panchang, R.; Nanajkar, M.; Sivadas, S.; van Breugel, P.; van Ijzerloo, L.; Rutgers, R.; Heip, C.H.R.; Middelburg, J.J. (2011). Oxygen minimum seafloor ecological (mal) functioning. J. Exp. Mar. Biol. Ecol. 398(1-2): 91-100. dx.doi.org/10.1016/j.jembe.2010.12.015
van Duyl, F.C.; Moodley, L.; Nieuwland, G.; van Ijzerloo, L.; van Soest, R.W.M.; Houtekamer, M.; Meesters, E.H.; Middelburg, J.J. (2011). Coral cavity sponges depend on reef-derived food resources: stable isotope and fatty acid constraints. Mar. Biol. (Berl.) 158(7): 1653-1666. dx.doi.org/10.1007/s00227-011-1681-z
Van Engeland, T.; Bouma, T.J.; Morris, E.P.; Brun, F.G.; Peralta, G.; Lara, M.; Hendriks, I.E.; Soetaert, K.; Middelburg, J.J.; Middelburg, J.J. (2011). Potential uptake of dissolved organic matter by seagrasses and macroalgae. Mar. Ecol. Prog. Ser. 427: 71-81. https://dx.doi.org/10.3354/meps09054
Braeckman, U.; Provoost, P.; Gribsholt, B.; Van Gansbeke, D.; Middelburg, J.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2010). Role of macrofauna functional traits and density in biogeochemical fluxes and bioturbation. Mar. Ecol. Prog. Ser. 399: 173-186. https://dx.doi.org/10.3354/meps08336, meer
De Laender, F.; Soetaert, K.; De Schamphelaere, K.A.C.; Middelburg, J.J.; Janssen, C.R. (2010). Ecological significance of hazardous concentrations in a planktonic food web. Ecotoxicol. Environ. Saf. 73(3): 247-253. http://dx.doi.org/10.1016/j.ecoenv.2009.12.008
De Laender, F.; van Oevelen, D.; Frantzen, S.; Middelburg, J.J.; Soetaert, K. (2010). Seasonal PCB bioaccumulation in an Arctic marine ecosystem: a model analysis incorporating lipid dynamics, food-web productivity and migration. Environ. Sci. Technol. 44(1): 356-361. https://dx.doi.org/10.1021/es902625u
Gazeau, F.; Gattuso, J.P.; Dawber, C.; Pronker, A.E.; Peene, F.; Peene, J.; Heip, C.H.R.; Middelburg, J.J. (2010). Effect of ocean acidification on the early life stages of the blue mussel (Mytilus edulis). Biogeosciences 7(7): 2051-2060. http://dx.doi.org/10.5194/bg-7-2051-2010
Provoost, P.; van Heuven, S.; Soetaert, K.; Laane, R.W.P.M.; Middelburg, J.J. (2010). Seasonal and long-term changes in pH in the Dutch coastal zone. Biogeosciences 7(11): 3869-3878. http://dx.doi.org/10.5194/bg-7-3869-2010
Van Frausum, J.; Middelburg, J.J.; Soetaert, K.; Meysman, F.J.R. (2010). Different proxies for the reactivity of aquatic sediments towards oxygen: a model assessment. Ecol. Model. 221(17): 2054-2067. https://dx.doi.org/10.1016/j.ecolmodel.2010.06.001
Zhang, J.; Gilbert, D.; Gooday, A.; Levin, L.; Naqvi, S.W.A.; Middelburg, J.J; Scranton, M.; Ekau, W.; Peña, A.; Dewitte, B.; Oguz, T.; Monteiro, P.M.S.; Urban, E.; Rabalais, N.N.; Ittekkot, V.; Kemp, W.M.; Ulloa, O.; Elmgren, R.; Escobar-Briones, E.; van der Plas, A.K. (2010). Natural and human-induced hypoxia and consequences for coastal areas: synthesis and future development. Biogeosciences 7(5): 1443-1467. https://dx.doi.org/10.5194/bg-7-1443-2010
Zonneveld, K.A.F.; Versteegh, G.J.M.; Kasten, S.; Eglinton, T.I.; Emeis, K.-C.; Huguet, C.; Koch, B.P.; de Lange, G.J.; de Leeuw, J.W.; Middelburg, J.J.; Mollenhauer, G.; Prahl, F.G.; Rethemeyer, J.; Wakeham, S.G. (2010). Selective preservation of organic matter in marine environments; processes and impact on the sedimentary record. Biogeosciences 7(2): 483-511. https://dx.doi.org/10.5194/bg-7-483-2010
Bouillon, S.; Abril, G.; Borges, A.V.; Dehairs, F.; Govers, G.; Hughes, H.J.; Merckx, R.; Meysman, F.J.R.; Nyunja, J.; Osburn, C.; Middelburg, J.J. (2009). Distribution, origin and cycling of carbon in the Tana River (Kenya): a dry season basin-scale survey from headwaters to the delta. Biogeosciences 6(11): 2475-2493. http://dx.doi.org/10.5194/bg-6-2475-2009
Cook, P.L.M.; van Oevelen, D.; Soetaert, K.; Middelburg, J.J. (2009). Carbon and nitrogen cycling on intertidal mudflats of a temperate Australian estuary: 4. Inverse model analysis and synthesis. Mar. Ecol. Prog. Ser. 394: 35-48. http://dx.doi.org/10.3354/meps08270
Cox, T.J.S.; Maris, T.; Soetaert, K.; Conley, D.J.; Van Damme, S.; Meire, P.; Middelburg, J.J.; Vos, M.; Struyf, E. (2009). A macro-tidal freshwater ecosystem recovering from hypereutrophication: the Schelde case study. Biogeosciences 6(12): 2935-2948
Dijkman, N.A.; Boschker, H.T.S.; Middelburg, J.J.; Kromkamp, J.C. (2009). Group-specific primary production based on stable-isotope labeling of phospholipid-derived fatty acids. Limnol. Oceanogr., Methods 7: 612-625. dx.doi.org/10.4319/lom.2009.7.612
Hofmann, A.F.; Middelburg, J.J.; Soetaert, K.; Meysman, F.J.R. (2009). pH modelling in aquatic systems with time-variable acid-base dissociation constants applied to the turbid, tidal Scheldt estuary. Biogeosciences 6(8): 1539-1561. http://dx.doi.org/10.5194/bg-6-1539-2009
Soetaert, K.; Middelburg, J.J. (2009). Modeling eutrophication and oligotrophication of shallow-water marine systems: the importance of sediments under stratified and well-mixed conditions. Hydrobiologia 629(1): 239-254. http://dx.doi.org/10.1007/s10750-009-9777-x
Van den Meersche, K.; Van Rijswijk, P.; Soetaert, K.; Middelburg, J.J. (2009). Autochthonous and allochthonous contributions to mesozooplankton diet in a tidal river and estuary: integrating carbon isotope and fatty acid constraints. Limnol. Oceanogr. 54(1): 62-74. https://dx.doi.org/10.4319/lo.2009.54.1.0062
Van Gaever, S.; Moodley, L.; Pasotti, F.; Houtekamer, M.; Middelburg, J.J.; Danovaro, R.; Vanreusel, A. (2009). Trophic specialisation of metazoan meiofauna at the Håkon Mosby Mud Volcano: fatty acid biomarker isotope evidence. Mar. Biol. (Berl.) 156(6): 1289-1296. dx.doi.org/10.1007/s00227-009-1170-9
Van Nugteren, P.; Herman, P.M. J.; Moodley, L.; Middelburg, J.J.; Vos, M.; Heip, C.H.R. (2009). Spatial distribution of detrital resources determines the outcome of competition between bacteria and a facultative detritivorous worm. Limnol. Oceanogr. 54(5): 1413-1419. https://dx.doi.org/10.4319/lo.2009.54.5.1413
Van Nugteren, P.; Moodley, L.; Brummer, G.-J.; Heip, C.H.R.; Herman, P.M. J.; Middelburg, J.J. (2009). Seafloor ecosystem functioning: the importance of organic matter priming. Mar. Biol. (Berl.) 156(11): 2277-2287. https://dx.doi.org/10.1007/s00227-009-1255-5
Andersson, J.H.; Woulds, C.; Schwartz, M.; Cowie, G.L.; Levin, L.A.; Soetaert, K.; Middelburg, J.J. (2008). Short-term fate of phytodetritus in sediments across the Arabian Sea Oxygen Minimum Zone. Biogeosciences 5(1): 43-53
Bouillon, S.; Borges, A.V.; Castañeda-Moya, E.; Diele, K.; Dittmar, T.; Duke, N.C.; Kristensen, E.; Lee, S.Y.; Marchand, C.; Middelburg, J.J.; Rivera-Monroy, V.H.; Smith III, T.J.; Twilley, R.R. (2008). Mangrove production and carbon sinks: A revision of global budget estimates. Global Biogeochem. Cycles 22(2): GB2013. https://dx.doi.org/10.1029/2007GB003052
Hofmann, A.F.; Meysman, F.J.R.; Soetaert, K.; Middelburg, J.J. (2008). A step-by-step procedure for pH model construction in aquatic systems. Biogeosciences 5(1): 227-251. https://dx.doi.org/10.5194/bg-5-227-2008
Hofmann, A.F.; Soetaert, K.; Middelburg, J.J. (2008). Present nitrogen and carbon dynamics in the Scheldt estuary using a novel 1-D model. Biogeosciences 5(4): 981-1006. https://dx.doi.org/10.5194/bg-5-981-2008
Moodley, L.; Steyaert, M.; Epping, E.; Middelburg, J.J.; Vincx, M.; van Avesaath, P.; Moens, T.; Soetaert, K. (2008). Biomass-specific respiration rates of benthic meiofauna: Demonstrating a novel oxygen micro-respiration system. J. Exp. Mar. Biol. Ecol. 357(1): 41-47. dx.doi.org/10.1016/j.jembe.2007.12.025
Ralison, O.H.; Borges, A.V.; Dehairs, F.; Middelburg, J.J.; Bouillon, S. (2008). Carbon biogeochemistry of the Betsiboka estuary (north-western Madagascar). Org. Geochem. 39(12): 1649-1658. http://dx.doi.org/10.1016/j.orggeochem.2008.01.010
Rossi, F.; Gribsholt, B.; Middelburg, J.J.; Heip, C.H.R. (2008). Context-dependent effects of suspension feeding on intertidal ecosystem functioning. Mar. Ecol. Prog. Ser. 354: 47-57. http://dx.doi.org/10.3354/meps07213
Van den Meersche, K.; Soetaert, K.; Middelburg, J.J. (2008). A Bayesian Compositional Estimator for microbial taxonomy based on biomarkers. Limnol. Oceanogr., Methods 6(5): 190-199. https://dx.doi.org/10.4319/lom.2008.6.190
Bouillon, S.; Middelburg, J.J.; Dehairs, F.A.; Borges, A.V.; Abril, G.; Flindt, M.R.; Ulomi, S.; Kristensen, E. (2007). Importance of intertidal sediment processes and porewater exchange on the water column biogeochemistry in a pristine mangrove creek (Ras Dege, Tanzania). Biogeosciences 4(3): 311-322
Gazeau, F.; Quiblier, C.; Jansen, J.M.; Gattuso, J.P.; Middelburg, J.J.; Heip, C.H.R. (2007). Impact of elevated CO2 on shellfish calcification. Geophys. Res. Lett. 34(7): L07603. https://dx.doi.org/10.1029/2006GL028554
Gribsholt, B.; Struyf, E.; Tramper, A.; De Brabandere, L.; Brion, N.; van Damme, S.; Meire, P.; Dehairs, F.; Middelburg, J.J.; Boschker, H.T.S. (2007). Nitrogen assimilation and short term retention in a nutrient-rich tidal freshwater marsh - a whole ecosystem 15N enrichment study. Biogeosciences 4(1): 11-26. https://dx.doi.org/10.5194/bg-4-11-2007
Meysman, F.J.R.; Malyuga, V.S.; Boudreau, B.P.; Middelburg, J.J. (2007). The influence of porosity gradients on mixing coefficients in sediments. Geochim. Cosmochim. Acta 71(4): 961-973
Rochelle-Newall, E.J.; Winter, C.; Barrón, C.; Borges, A.V.; Duarte, C.M.; Elliott, M.; Frankignoulle, M.; Gazeau, F.; Middelburg, J.J.; Pizay, M.-D.; Gattuso, J.P. (2007). Artificial neural network analysis of factors controlling ecosystem metabolism in coastal systems. Ecol. Appl. 17(Supplement): S185-S196. http://dx.doi.org/10.1890/05-1769.1
Rossi, F.; Forster, R.M.; Montserrat, F.; Ponti, M.; Terlizzi, A.; Ysebaert, T.J.; Middelburg, J.J. (2007). Human trampling as short-term disturbance on intertidal mudflats: effects on macrofauna biodiversity and population dynamics of bivalves. Mar. Biol. (Berl.) 151(6): 2077-2090. dx.doi.org/10.1007/s00227-007-0641-0
Soetaert, K.; Hofmann, A.F.; Middelburg, J.J.; Meysman, F.J.R.; Greenwood, J. (2007). The effect of biogeochemical processes on pH. Mar. Chem. 105(1-2): 30-51
Struyf, E.; Van Damme, S.; Gribsholt, B.; Bal, K.; Beauchard, O.; Middelburg, J.J.; Meire, P. (2007). Phragmites australis and silica cycling in tidal wetlands. Aquat. Bot. 87(2): 134-140. dx.doi.org/10.1016/j.aquabot.2007.05.002
Veuger, B.; Middelburg, J.J. (2007). Incorporation of nitrogen from amino acids and urea by benthic microbes: role of bacteria versus algae and coupled incorporation of carbon. Aquat. Microb. Ecol. 48(1): 35-46. http://dx.doi.org/10.3354/ame048035
Andersson, M.G.I.; Brion, N.; Middelburg, J.J. (2006). Comparison of nitrifier activity versus growth in the Scheldt estuary - a turbid, tidal estuary in northern Europe. Aquat. Microb. Ecol. 42(2): 149-158. dx.doi.org/10.3354/ame042149
Andersson, M.G.I.; Van Rijswijk, P.; Middelburg, J.J. (2006). Uptake of dissolved inorganic nitrogen, urea and amino acids in the scheldt estuary: comparison of organic carbon and nitrogen uptake. Aquat. Microb. Ecol. 44(3): 303-315. http://dx.doi.org/10.3354/ame044303
Gribsholt, B.; Struyf, E.; Tramper, A.; Andersson, M.G.I.; Brion, N.; De Brabandere, L.; Van Damme, S.; Meire, P.; Middelburg, J.J.; Dehairs, F.A.; Boschker, H.T.S. (2006). Ammonium transformation in a nitrogen-rich tidal freshwater marsh. Biogeochemistry 80(3): 289-298
Meysman, F.; Galaktionov, O.S.; Gribsholt, B.; Middelburg, J.J. (2006). Bioirrigation in permeable sediments: advective pore-water transport induced by burrow ventilation. Limnol. Oceanogr. 51(1): 142-156
Meysman, F.J.R.; Galaktionov, O.S.; Gribsholt, B.; Middelburg, J.J. (2006). Bio-irrigation in permeable sediments: an assessment of model complexity. J. Mar. Res. 64(4): 589-627
Meysman, F.J.R.; Middelburg, J.J.; Heip, C.H.R. (2006). Bioturbation: a fresh look at Darwin's last idea. Trends Ecol. Evol. 21(12): 688-695. dx.doi.org/10.1016/j.tree.2006.08.002
Soetaert, K.; Middelburg, J.J.; Heip, C.H.R.; Meire, P.; Van Damme, S.; Maris, T. (2006). Long-term change in dissolved inorganic nutrients in the heterotrophic Scheldt estuary (Belgium, The Netherlands). Limnol. Oceanogr. 51(1): 409-423. dx.doi.org/10.4319/lo.2006.51.1_part_2.0409
Struyf, E.; Dausse, A.; Van Damme, S.; Bal, K.; Gribsholt, B.; Boschker, E.; Middelburg, J.; Meire, P. (2006). Tidal marshes and biogenic silica recycling at the land-sea interface. Limnol. Oceanogr. 51(2): 838-846. https://dx.doi.org/10.4319/lo.2006.51.2.0838
van Oevelen, D.; Middelburg, J.J.; Soetaert, K.; Moodley, L. (2006). The fate of bacterial carbon in an intertidal sediment: Modeling an in situ isotope tracer experiment. Limnol. Oceanogr. 51(3): 1302-1314. http://dx.doi.org/10.4319/lo.2006.51.3.1302
van Oevelen, D.; Soetaert, K.; Middelburg, J.J.; Herman, P.M.J.; Moodley, L.; Hamels, I.; Moens, T.; Heip, C.H.R. (2006). Carbon flows through a benthic food web: integrating biomass, isotope and tracer data. J. Mar. Res. 64(3): 453-482. dx.doi.org/10.1357/002224006778189581
van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J. (2006). The trophic significance of bacterial carbon in a marine intertidal sediment: Results of an in situ stable isotope labeling study. Limnol. Oceanogr. 51(5): 2349-2359. http://dx.doi.org/10.4319/lo.2006.51.5.2349
Veuger, B.; van Oevelen, D.; Boschker, H.T.S.; Middelburg, J.J. (2006). Fate of peptidoglycan in an intertidal sediment: An in situ 13C-labeling study. Limnol. Oceanogr. 51(4): 1572-1580. http://dx.doi.org/10.4319/lo.2006.51.4.1572
Vos, M.; Vet, L.E.M.; Wäckers, F.L.; Middelburg, J.J.; van der Putten, W.H.; Mooij, W.M.; Heip, C.H.R.; Van Donk, E. (2006). Infochemicals structure marine, terrestrial and freshwater food webs: Implications for ecological informatics. Ecological Informatics 1(1): 23-32
Boschker, H.T.S.; Kromkamp, J.C.; Middelburg, J.J. (2005). Biomarker and carbon isotopic constraints on bacterial and algal community structure and functioning in a turbid, tidal estuary. Limnol. Oceanogr. 50(1): 70-80. https://dx.doi.org/10.4319/lo.2005.50.1.0070
Duarte, A.C.; Middelburg, J.J.; Caraco, N. (2005). Major role of marine vegetation on the oceanic carbon cycle. Biogeosciences 2(1): 1-8. https://doi.org/10.5194/bgd-1-659-2004
Gattuso, J.P.; Dawson, N.A.; Duarte, C.M.; Middelburg, J. (2005). Patterns of publication effort in coastal biogeochemistry: a bibliometric survey (1971 to 2003). Mar. Ecol. Prog. Ser. 294: 9-22
Gribsholt, B.; Boschker, H.T.S.; Struyf, E.; Andersson, M.; Tramper, A.; De Brabandere, L.; Van Damme, S.; Brion, N.; Meire, P.; Dehairs, F.; Middelburg, J.J.; Heip, C.H.R. (2005). Nitrogen processing in a tidal freshwater marsh: a whole-ecosystem 15N labeling study. Limnol. Oceanogr. 50(6): 1945-1959. dx.doi.org/10.4319/lo.2005.50.6.1945
Meysman, F.; Galaktionov, O.S.; Middelburg, J.J. (2005). Irrigation patterns in permeable sediments induced by burrow ventilation: a case study of Arenicola marina. Mar. Ecol. Prog. Ser. 303: 195-212. https://dx.doi.org/10.3354/meps303195
Meysman, F.; Middelburg, J.J. (2005). Acid-volatile sulfide (AVS) - a comment. Mar. Chem. 97(1-2): 206- 212
Meysman, F.J.R.; Boudreau, B.P.; Middelburg, J.J. (2005). Modeling reactive transport in sediments subject to bioturbation and compaction. Geochim. Cosmochim. Acta 69(14): 3601-3617
Moodley, L.; Middelburg, J.J.; Herman, P.M.J.; Soetaert, K.; de Lange, G.J. (2005). Oxygenation and organic-matter preservation in marine sediments: Direct experimental evidence from ancient organic carbon-rich deposits. Geology (Boulder Colo.) 33(11): 889-892. http://dx.doi.org/10.1130/G21731.1
Moodley, L.; Middelburg, J.J.; Soetaert, K.; Boschker, H.T.S.; Herman, P.M.J.; Heip, C.H.R. (2005). Similar rapid response to phytodetritus deposition in shallow and deep-sea sediments. J. Mar. Res. 63(2): 457-469
Veuger, B.; Middelburg, J.J.; Boschker, H.T.S.; Houtekamer, M. (2005). Analysis of 15N incorporation into D-alanine: a new method for tracing nitrogen uptake by bacteria. Limnol. Oceanogr., Methods 3: 230-240
Andersson, J.H.; Wijsman, J.W.M.; Herman, P.M.J.; Middelburg, J.J.; Soetaert, K.; Heip, C.H.R. (2004). Respiration patterns in the deep ocean. Geophys. Res. Lett. 31(3): L03304 (1-4). https://dx.doi.org/10.1029/2003GL018756
Rossi, F.; Herman, P.M.J.; Middelburg, J.J. (2004). Interspecific and intraspecific variation of d13C and d15N in deposit- and suspension-feeding bivalves (Macoma balthica and Cerastoderma edule): evidence of ontogenetic changes in feeding mode of Macoma balthica. Limnol. Oceanogr. 49(2): 408-414
Van den Meersche, K.; Middelburg, J.J.; Soetaert, K.; Van Rijswijk, P.; Boschker, H.T.S.; Heip, C.H.R. (2004). Carbon-nitrogen coupling and algal-bacterial interactions during an experimental bloom: modeling a 13C tracer experiment. Limnol. Oceanogr. 49(3): 862-878. https://dx.doi.org/10.4319/lo.2004.49.3.0862
Veuger, B.; Middelburg, J.J.; Boschker, H.T.S.; Nieuwenhuize, J.; Van Rijswijk, P.; Rochelle-Newall, E.J.; Navarro, N. (2004). Microbial uptake of dissolved organic and inorganic nitrogen in Randers Fjord. Est., Coast. and Shelf Sci. 61(3): 507-515. https://dx.doi.org/10.1016/j.ecss.2004.06.014
Widdows, J.; Blauw, A.; Heip, C.H.R.; Herman, P.M.J.; Lucas, C.H.; Middelburg, J.J.; Schmidt, S.; Brinsley, M.D.; Twisk, F.; Verbeek, H. (2004). Role of physical and biological processes in sediment dynamics of a tidal flat in Westerschelde Estuary, SW Netherlands. Mar. Ecol. Prog. Ser. 274: 41-56. https://dx.doi.org/10.3354/meps274041
Ferro, I.; Van Nugteren, P.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (2003). Effect of macrofauna, oxygen exchange and particle reworking on iron and manganese sediment biogeochemistry: a laboratory experiment. Vie Milieu (1980) 53(4): 211-220
Meysman, F.J.R.; Boudreau, B.P.; Middelburg, J.J. (2003). Relations between local, nonlocal, discrete and continuous models of bioturbation. J. Mar. Res. 61: 391-410
Meysman, F.J.R.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (2003). Reactive transport in surface sediments: 2. Media: an object-oriented problem-solving environment for early diagenesis. Comput. Geosci. 29(3): 301-318
Meysman, F.J.R.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (2003). Reactive transport in surface sediments: 1. Model complexity and software quality. Comput. Geosci. 29(3): 291-300
Boschker, H.T.S.; Middelburg, J.J. (2002). Mini review: stable isotopes and biomarkers in microbial ecology. FEMS Microbiol. Ecol. 40(2): 85-95
Boschker, H.T.S.; Middelburg, J.J. (2002). Stable isotopes and biomarkers in microbial ecology. FEMS Microbiol. Ecol. 40: 85-95
de Bie, M.J.M.; Middelburg, J.J.; Starink, M.; Laanbroek, H.J. (2002). Factors controlling nitrous oxide at the microbial community and estuarine scale. Mar. Ecol. Prog. Ser. 240: 1-9. http://dx.doi.org/10.3354/meps240001
Frankignoulle, M.; Middelburg, J.J. (2002). Biogases in tidal European Estuaries: the BIOGEST project. Biogeochemistry 59(1-2): 1-4. dx.doi.org/10.1023/A:1015544311392
Gacia, E.; Duarte, C.M.; Middelburg, J. (2002). Carbon and nutrient deposition in a Mediterranean seagrass (Posidonia oceanica) meadow. Limnol. Oceanogr. 47: 23-32. https://dx.doi.org/10.4319/lo.2002.47.1.0023
Middelburg, J.J.; Nieuwenhuize, J.; Iversen, N.; Høgh, N.; de Wilde, H.; Helder, W.; Seifert, R.; Christof, O. (2002). Methane distribution in European tidal estuaries. Biogeochemistry 59(1-2): 95-119. http://dx.doi.org/10.1023/A:1015515130419
Moens, T.; Luyten, C.; Middelburg, J.J.; Herman, P.M.J.; Vincx, M. (2002). Tracing organic matter sources of estuarine tidal flat nematodes with stable carbon isotopes. Mar. Ecol. Prog. Ser. 234: 127-137. dx.doi.org/10.3354/meps234127
Moodley, L.; Middelburg, J.J.; Boschker, H.T.S.; Duineveld, G.C.A.; Pel, R.; Herman, P.M.J.; Heip, C.H.R. (2002). Erratum: Bacteria and foraminifera: Key players in a short-term deep-sea benthic response to phytodetritus. Mar. Ecol. Prog. Ser. 239: 230
Moodley, L.; Middelburg, J.J.; Boschker, H.T.S.; Duineveld, G.C.A.; Pel, R.; Herman, P.M. J.; Heip, C.H.R. (2002). Bacteria and foraminifera: Key players in a short-term deep-sea benthic response to phytodetritus. Mar. Ecol. Prog. Ser. 236: 23-29
Wijsman, J.W.M.; Herman, P.M.J.; Middelburg, J.J.; Soetaert, K. (2002). A model for early diagenetic processes in sediments of the continental shelf of the Black Sea. Est., Coast. and Shelf Sci. 54(3): 403-421. https://dx.doi.org/10.1006/ecss.2000.0655
Dauwe, B.; Middelburg, J.J.; Herman, P.M.J. (2001). Effect of oxygen on the degradability of organic matter in subtidal and intertidal sediments of the North Sea area. Mar. Ecol. Prog. Ser. 215: 13-22
Heip, C.H.R.; Duineveld, G.; Flach, E.; Graf, G.; Helder, W.; Herman, P.M.J.; Lavaleye, M.S.S.; Middelburg, J.J.; Pfannkuche, O.; Soetaert, K.; Soltwedel, T.; de Stiger, H.; Thomsen, L.; Vanaverbeke, J.; de Wilde, P. (2001). The role of the benthic biota in sedimentary metabolism and sediment-water exchange processes in the Goban Spur area (NE Atlantic). Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 48(14-15): 3223-3243. dx.doi.org/10.1016/S0967-0645(01)00038-8
Heip, C.H.R.; Herman, P.M.J.; Middelburg, J. (2001). The coin has two sides. Mar. Ecol. Prog. Ser. 211: 308
Herman, P.M.J.; Middelburg, J.J.; Heip, C.H.R. (2001). Benthic community structure and sediment processes on an intertidal flat: results from the ECOFLAT project. Cont. Shelf Res. 21(18-19): 2055-2071. http://dx.doi.org/10.1016/S0278-4343(01)00042-5
Herman, P.M.J.; Soetaert, K.; Middelburg, J.J.; Heip, C.H.R.; Lohse, L.; Epping, E.; Helder, W.; Antia, A.N.; Peinert, R. (2001). The seafloor as the ultimate sediment trap: using sediment properties to constrain benthic-pelagic exchange processes at the Goban Spur. Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 48: 3245-3264
Middelburg, J.J.; Nieuwenhuize, J. (2001). Nitrogen isotope tracing of dissolved inorganic nitrogen behaviour in tidal estuaries. Est., Coast. and Shelf Sci. 53(3): 385-391. https://dx.doi.org/10.1006/ecss.2001.0805
Soetaert, K.; Herman, P.M.J.; Middelburg, J.J.; Heip, C.H.R.; Smith, C.L.; Tett, P.; Wild-Allen, K. (2001). Numerical modelling of the shelf break ecosystem: reproducing benthic and pelagic measurements. Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 48(14-15): 3141-3177
Wijsman, J.W.M.; Middelburg, J.J.; Herman, P.M.J.; Böttcher, M.E.; Heip, C.H.R. (2001). Sulfur and iron speciation in surface sediments along the northwestern margin of the Black Sea. Mar. Chem. 74(4): 261-278. https://dx.doi.org/10.1016/S0304-4203(01)00019-6
Wijsman, J.W.M.; Middelburg, J.J.; Heip, C.H.R. (2001). Reactive iron in Black Sea sediments: implications for iron cycling. Mar. Geol. 172(3-4): 167-180. https://dx.doi.org/10.1016/S0025-3227(00)00122-5
Wijsman, J.W.M.; Middelburg, J.J.; Heip, C.H.R. (2001). Reactive iron in Black Sea sediments: implications for iron cycling. Freshwat. Biol. 55(4): 85-96
Abril, G.; Riou, S.A.; Etcheber, H.; Frankignoulle, M.; De Wit, R.; Middelburg, J.J. (2000). Transient, tidal time-scale, nitrogen transformations in an estuarine turbidity maximum-fluid mud system (The Gironde, south-west France). Est., Coast. and Shelf Sci. 50(5): 703-715. dx.doi.org/10.1006/ecss.1999.0598
Herman, P.M.J.; Middelburg, J.J.; Widdows, J.; Lucas, C.H.; Heip, C.H.R. (2000). Stable isotopes as trophic tracers: combining field sampling and manipulative labelling of food resources for macrobenthos. Mar. Ecol. Prog. Ser. 204: 79-92. https://dx.doi.org/10.3354/meps204079
Middelburg, J.J.; Barranguet, C.; Boschker, H.T.S.; Herman, P.M.J.; Moens, T.; Heip, C.H.R. (2000). The fate of intertidal microphytobenthos carbon: an in situ 13C-labeling study. Limnol. Oceanogr. 45(6): 1224-1234. http://dx.doi.org/10.4319/lo.2000.45.6.1224
Middelburg, J.J.; Nieuwenhuize, J. (2000). Uptake of dissolved inorganic nitrogen in turbid, tidal estuaries. Mar. Ecol. Prog. Ser. 192: 79-88. https://dx.doi.org/10.3354/meps192079
Middelburg, J.J.; Nieuwenhuize, J. (2000). Nitrogen uptake by heterotrophic bacteria and phytoplankton in the nitrate rich Thames estuary. Mar. Ecol. Prog. Ser. 203: 13-21
Moodley, L.; Boschker, H.T.S.; Middelburg, J.J.; Pel, R.; Herman, P.M.J.; de Deckere, E.; Heip, C.H.R. (2000). Ecological significance of benthic foraminifera: 13C labelling experiments. Mar. Ecol. Prog. Ser. 202: 289-295
Quinn, G.; Fee, E.; Larsen, P.S.; Shumway, S.E.; Gili, J.-M.; Kiorboe, T.; Hagerman, L.; Beninger, P.; Tessier, A.; Duarte, C.M.; Raven, J.; Middelburg, J.J.; Lesser, M.; Grémare, A.; Cole, J.; Larsen, O.N.; Beukema, J.J.; Reise, K.; Canfield, D.; Kinne, O. (2000). The peer-review system: time for re-assessment? Mar. Ecol. Prog. Ser. 192: 305-313
Soetaert, K.; Middelburg, J.J.; Herman, P.M.J.; Buis, K. (2000). On the coupling of benthic and pelagic biogeochemical models. Earth-Sci. Rev. 51: 173-201
Dauwe, B.; Middelburg, J.J.; Van Rijswijk, P.; Sinke, J.; Herman, P.M.J.; Heip, C.H.R. (1999). Enzymatically hydrolyzable amino acids in North Sea sediments and their possible implication for sediment nutritional values. J. Mar. Res. 57(1): 109-134. https://dx.doi.org/10.1357/002224099765038580
Herman, P.M.J.; Middelburg, J.J.; van de Koppel, J.; Heip, C.H.R. (1999). Ecology of estuarine macrobenthos. Adv. Ecol. Res. 29: 195-240
Dauwe, B.; Middelburg, J.J. (1998). Amino acids and hexosamines as indicators of organic matter degradation state in North Sea sediments. Limnol. Oceanogr. 43(5): 782-798. https://dx.doi.org/10.4319/lo.1998.43.5.0782
Middelburg, J.; Nieuwenhuize, J. (1998). Carbon and nitrogen stable isotopes in suspended matter and sediments from the Schelde Estuary. Mar. Chem. 60(3-4): 217-225. dx.doi.org/10.1016/S0304-4203(97)00104-7
Moodley, L.; Heip, C.H.R.; Middelburg, J.J. (1998). Benthic activity in sediments of the northwestern Adriatic Sea: sediment oxygen consumption, macro- and meiofauna dynamics. J. Sea Res. 40(3-4): 263-280. dx.doi.org/10.1016/S1385-1101(98)00026-4
Soetaert, K.; Herman, P.M.J.; Middelburg, J.J.; Heip, C.H.R. (1998). Assessing organic matter mineralization, degradability and mixing rate in an ocean margin sediment (Northeast Atlantic) by diagenetic modeling. J. Mar. Res. 56(2): 519-534
Soetaert, K.; Vanaverbeke, J.; Heip, C.H.R.; Herman, P.M.J.; Middelburg, J.J.; Sandee, A.; Duineveld, G.C.A. (1997). Nematode distribution in ocean margin sediments of the Goban Spur (northeast Atlantic) in relation to sediment geochemistry. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 44(9-10): 1671-1683
Middelburg, J. J.; Nieuwenhuize, J.; Slim, F. J.; Ohowa, B. (1996). Sediment biogeochemistry in an East African mangrove forest (Gazi Bay,Kenya). Biogeochemistry 34(3): 133-155
Middelburg, J.J.; Soetaert, K.; Herman, P.M.J.; Heip, C.H.R. (1996). Denitrification in marine sediments: a model study. Global Biogeochem. Cycles 10(4): 661-673
Middelburg, J.J.; Soetaert, K.; Herman, P.M.J. (1996). Evaluation of the nitrogen isotope-pairing method for measuring benthic denitrification: A simulation analysis. Limnol. Oceanogr. 41(8): 1839-1844
Middelburg, J.J.; Klaver, G.; Nieuwenhuize, J.; Wielemaker, A.; Van der Nat, F.J.W.A.; Vlug, T. (1996). Organic matter mineralization in intertidal sediments along an estuarine gradient. Mar. Ecol. Prog. Ser. 132: 157-168. https://dx.doi.org/10.3354/meps132157
Moodley, L.; Herman, P.M. J.; Middelburg, J.J.; Heip, C.H.R. (1996). Comment on: Subsurface activity of benthic foraminifera. Mar. Ecol. Prog. Ser. 145(1-3): 303-304
Soetaert, K.; Herman, P.M.J.; Middelburg, J.J. (1996). Dynamic response of deep-sea sediments to seasonal variations: a model. Limnol. Oceanogr. 41(8): 1651-1668. http://dx.doi.org/10.4319/lo.1996.41.8.1651
Soetaert, K.; Herman, P.M.J.; Middelburg, J.J.; Heip, C.H.R.; deStigter, H.S.; van Weering, T.C.E.; Epping, E.; Helder, W. (1996). Modeling 210Pb-derived mixing activity in ocean margin sediments: diffusive versus nonlocal mixing. J. Mar. Res. 54: 1207-1227
Soetaert, K.; Herman, P.M.J.; Middelburg, J.J. (1996). A model of early diagenetic processes from the shelf to abyssal depths. Geochim. Cosmochim. Acta 60(6): 1019-1040. http://dx.doi.org/10.1016/0016-7037(96)00013-0
Heip, C.H.R.; Goosen, N.K.; Herman, P.M.J.; Kromkamp, J.; Middelburg, J.J.; Soetaert, K. (1995). Production and consumption of biological particles in temperate tidal estuaries, in: Ansell, A.D. et al.Oceanogr. Mar. Biol. Ann. Rev. 33. Oceanography and Marine Biology: An Annual Review, 33: pp. 1-149
Middelburg, J.J.; Klaver, G.; Nieuwenhuize, J.; Markusse, R.; Vlug, T.; Van der Nat, F.J.W.A. (1995). Nitrous oxide emissions from estuarine intertidal sediments. Hydrobiologia 311(1-3): 43-55. https://dx.doi.org/10.1007/BF00008570
Middelburg, J.J.; Klaver, G.; Nieuwenhuize, J.; Vlug, T. (1995). Carbon and nitrogen cycling in intertidal sediments near Doel, Scheldt Estuary. Hydrobiologia 311(1-3): 57-69. https://dx.doi.org/10.1007/BF00008571
Hofmann, A.F.; Meysman, F.J.R.; Soetaert, K.; Middelburg, J.J. (2009). Factors governing the pH in a heterotrophic, turbid, tidal estuary. Biogeosci. Discuss. 6: 197-240. dx.doi.org/10.5194/bgd-6-197-2009
Hofmann, A.F.; Soetaert, K.; Middelburg, J.J. (2008). Nitrogen and carbon dynamics in the Scheldt estuary at the beginning of the 21st century - a modelling study. Biogeosci. Discuss. 5: 83-161
Gazeau, F.; Middelburg, J.J.; Loijens, M.; Vanderborght, J.-P.; Pizay, M.-D.; Gattuso, J.P. (2006). Phytoplanktonic primary production in a nutrient-rich estuary - comparison of methods. Geophys. Res. Abstr. 8: 01682
Meysman, F.J.R.; Galaktionov, O.S.; Cook, P.L.M.; Janssen, F.; Huettel, M.; Middelburg, J.J. (2006). Quantifying biologically and physically induced flow and tracer dynamics in permeable sediments. Biogeosci. Discuss. 3: 1809-1858
Bontes, B.M.; Pel, R.; Ibelings, B.W.; Boschker, H.T.S.; Middelburg, J.J.; Van Donk, E. (2005). The effects of biomanipulation on the biogeochemistry, carbon isotopic composition and pelagic food web relations of a shallow turf lake. Biogeosci. Discuss. 2(4): 997-1031. https://dx.doi.org/10.5194/bgd-2-997-2005
Gazeau, F.; Gattuso, J.P.; Middelburg, J.J.; Brion, N.; Schiettecatte, L.-S.; Frankignoulle, M.; Borges, A.V. (2005). Planktonic and whole system metabolism in a nutrient-rich estuary (the Scheldt estuary). Estuaries 28(6): 868-883. http://dx.doi.org/10.1007/BF02696016
Rochelle-Newall, E.J.; Barrón, C.; Borges, A.V.; Duarte, C.M.; Frankignoulle, M.; Gazeau, F.; Middelburg, J.J.; Pizay, M.-D.; Thioulouse, J.; Gattuso, J.P. (2005). Community metabolism in three contrasting coastal ecosystems. Geophys. Res. Abstr. 7: 09330
Gazeau, F.; Borges, A.V.; Schiettecatte, L.-S.; Middelburg, J.; Frankignoulle, M.; Gattuso, J.P. (2004). Pelagic metabolism of the Scheldt estuary on an annual scale. Geophys. Res. Abstr. 6: 05737
Middelburg, J.J.; Soetaert, K.; Herman, P.M.J. (1996). Empirical relationships for use in global diagenetic models. Deep-Sea Res. 44(2): 327-344
de Lange, G.J.; Middelburg, J.J.; Poorter, R.P.; Shofiyah, S. (1989). Ferromanganese encrustations on the seabed west of Misool, eastern Indonesia. Neth. J. Sea Res. 24(4): 541-553
Middelburg, J.J.; de Lange, G.J.; van der Weijden, C.H.; Shofiyah, S. (1989). Sediment chemistry of Kau Bay, Halmahera (eastern Indonesia). Neth. J. Sea Res. 24(4): 607-613
Middelburg, J.J.; de Lange, G.J. (1989). The isolation of Kau Bay during the last glaciation: direct evidence from interstitial water chlorinity. Neth. J. Sea Res. 24(4): 615-622
van der Weijden, C.H.; de Lange, G.J.; Middelburg, J.J.; van der Sloot, H.A.; Hoede, D.; Shofiyah, S. (1989). Geochemical characteristics of Kau Bay water. Neth. J. Sea Res. 24(4): 583-589
Middelburg, J.J. (2019). Marine carbon biogeochemistry: A primer for earth system scientists. SpringerBriefs in Earth System Sciences. Springer: Cham. vi, 118 pp. https://dx.doi.org/10.1007/978-3-030-10822-9
Wolanski, E.; Mclusky, D.S.; Laane, R.W.P.; Middelburg, J.J. (Ed.) (2011). Treatise on Estuarine and Coastal Science: 5. Biogeochemistry. Elsevier: Amsterdam. ISBN 978-0-12-387745-1. 362 pp.
Hagens, M.; Slomp, C.P.; Meysman, F.J.R.; Brenner, H.; Borges, A.V.; Middelburg, J.J. (2013). The influence of biogeochemical processes on the pH dynamics in the seasonally hypoxic saline Lake Grevelingen, The Netherlands, in: The 45th International Liège Colloquium on Ocean Dynamics. The variability of primary production in the ocean: from the synoptic to the global scale, Liège, Belgium, 13-17 May, 2013: Abstracts. pp. [1]
Braeckman, U.; Provoost, P.; Sabbe, K.; Middelburg, J.J.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2011). Temporal variation in macrobenthic diet as inferred from fatty acid biomarkers, in: Braeckman, U. Macrobenthos structuring the sea floor: importance of its functional biodiversity for the benthic ecosystem = De structurerende rol van macrobenthos in de zeebodem: belang van de functionele biodiversiteit voor het benthische ecosysteem. pp. 103-130
Braeckman, U.; Provoost, P.; Gribsholt, B.; Van Gansbeke, D.; Middelburg, J.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2011). Role of macrofauna functional traits and density in biogeochemical fluxes and bioturbation, in: Braeckman, U. Macrobenthos structuring the sea floor: importance of its functional biodiversity for the benthic ecosystem = De structurerende rol van macrobenthos in de zeebodem: belang van de functionele biodiversiteit voor het benthische ecosysteem. pp. 25-50, meer
Braeckman, U.; Provoost, P.; Moens, T.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2011). Biological vs. physical mixing effects on benthic food web dynamics, in: Braeckman, U. Macrobenthos structuring the sea floor: importance of its functional biodiversity for the benthic ecosystem = De structurerende rol van macrobenthos in de zeebodem: belang van de functionele biodiversiteit voor het benthische ecosysteem. pp. 77-101
Gazeau, F.; Middelburg, J.J.; Heip, C.H. (2011). Benthic calcification in the Dutch Coastal zone and effect on ocean acidification on the growth of commercially important bivalve species, in: Heip, C. et al. (Ed.) Aspects of coastal research in contribution to LOICZ in the Netherlands and Flanders (2002-2010). LOICZ Research & Studies, 38: pp. 108-116
Heip, C.H.R.; Middelburg, J.J.; Philippart, C.J.M. (2011). Functioning of ecosystems at the land-ocean interface, in: Wolanski, E. et al. (Ed.) Treatise on Estuarine and Coastal Science: 7. Functioning ecosystems at the land-ocean interface. pp. 1-3. dx.doi.org/10.1016/B978-0-12-374711-2.00701-4
Middelburg, J.J.; Andersson, M.; Boschker, E.; Brion, N.; Dehairs, F.; Dijkman, N.; Kromkamp, J.C.; Soetaert, K. (2011). Carbon and nitrogen cycling in the Scheldt estuary: the major players, long-term changes and an integrated view, in: Heip, C. et al. (Ed.) Aspects of coastal research in contribution to LOICZ in the Netherlands and Flanders (2002-2010). LOICZ Research & Studies, 38: pp. 148-154
Moens, T.; Moodley, L.; Steyaert, M.; Van Colen, C.; Van Oevelen, D.; Boschker, H.T.S.; Herman, P.M.J.; Middelburg, J.J.; Soetaert, K.; Ysebaert, T.; Vincx, M. (2011). The structure and functional roles of tidal flat meiobenthos, in: Heip, C. et al. (Ed.) Aspects of coastal research in contribution to LOICZ in the Netherlands and Flanders (2002-2010). LOICZ Research & Studies, 38: pp. 171-184
Van den Meersche, K.; Middelburg, J.J.; Soetaert, K.; Van Rijswijk, P.; Boschker, H.T.S.; Heip, C.H.R. (2009). Carbon-nitrogen coupling and algal-bacterial interactions during an experimental bloom: modeling a 13C tracer experiment, in: Van den Meersche, K. Carbon flows in the planktonic food web of temperate estuaries: a combined approach using stable isotopes, biomarkers and modeling. pp. 97-129
Van den Meersche, K.; Soetaert, K.; Middelburg, J.J. (2009). A Bayesian Compositional Estimator for microbial taxonomy based on biomarkers, in: Van den Meersche, K. Carbon flows in the planktonic food web of temperate estuaries: a combined approach using stable isotopes, biomarkers and modeling. pp. 51-66
Van den Meersche, K.; Soetaert, K.; Dijkman, N.A.; Middelburg, J.J. (2009). Plankton dynamics in an estuarine plume: a 13C and 15N tracer study, in: Van den Meersche, K. Carbon flows in the planktonic food web of temperate estuaries: a combined approach using stable isotopes, biomarkers and modeling. pp. 131-160
Kroeze, C.; Middelburg, J.J.; Leemans, R.; Escobar-Briones, E.; Fennel, W.; Glaser, M.; Harashima, A.; Liu, K.-K.; Meybeck, M. (2008). Integrating tools to assess changes in semi-enclosed marine systems, in: Urban Jr., E.R. et al. (Ed.) Watersheds, bays, and bounded seas: The science and management of semi-enclosed marine systems. Scientific Committee on Problems of the Environment (SCOPE) Series, 70: pp. 77-96
Middelburg, J.J.; Herman, P.M.J. (2007). Organic matter processing in tidal estuaries, in: Goldberg, E.D. (Ed.) (1974). Marine chemistry. The sea: ideas and observations on progress in the study of the seas, 5: pp. 127-147. http://dx.doi.org/10.1016/j.marchem.2006.02.007
van Tussenbroek, B.I.; Vonk, J.A.; Stapel, J.; Erftemeijer, P.L.A.; Middelburg, J.J.; Zieman, J.C. (2006). The biology of Thalassia: paradigms and recent advances in research, in: Larkum, A.W.D. et al. (Ed.) Seagrasses: biology, ecology and conservation. pp. 409-439
Aristegui, J.; Agusti, S.; Middelburg, J.J.; Duarte, C.M. (2005). Respiration in the mesopelagic and bathypelagic zones of the ocean, in: del Giorgio, P.A. et al. (Ed.) Respiration in aquatic ecosystems. pp. 181-205
Heip, C.H.R.; Herman, P.M.J.; Middelburg, J.J.; Moodley, L.; Soetaert, K.; Ysebaert, T.J. (2005). The ecology of estuarine intertidal flats: the example of the Westerschelde, in: Wilson, J.G. (Ed.) The intertidal ecosystem: the value of Ireland’s shores. pp. 179-195
Meysman, F.J.R.; Galaktionov, O.S.; Madani, S.; Middelburg, J.J. (2005). Modelling biological interactions in aquatic sediments as coupled reactive transport, in: Kristensen, E. et al. (Ed.) Interactions between macro- and microorganisms in marine sediments. Coastal and Estuarine Studies, 60: pp. 359-388
Middelburg, J.J.; Duarte, C.M.; Gattuso, J.P. (2005). Respiration in coastal benthic communities, in: del Giorgio, P.A. et al. (Ed.) Respiration in aquatic ecosystems. pp. 207-225
Middelburg, J.J.; Soetaert, K. (2005). The role of sediments in shelf ecosystem dynamics, in: Robinson, A.R. et al. (Ed.) The global coastal ocean. Multiscale interdisciplinary processes. The sea: ideas and observations on progress in the study of the seas, 13: pp. 353-374
Struyf, E.; Dausse, A.; Van Damme, S.; Bal, K.; Gribsholt, B.; Boschker, E.; Middelburg, J.; Meire, P. (2005). Tidal marshes and biogenic silica recycling at the land-sea interface, in: Struyf, E. The role of freshwater marshes in estuarine silica cycling (Scheldt estuary) = De rol van zoetwaterschorren in de estuariene siliciumcyclus (Schelde-estuarium). pp. 75-97
Struyf, E.; Van Damme, S.; Gribsholt, B.; Middelburg, J.J.; Meire, P. (2005). Biogenic silica in freshwater marsh sediments and vegetation (Schelde estuary, Belgium), in: Struyf, E. The role of freshwater marshes in estuarine silica cycling (Scheldt estuary) = De rol van zoetwaterschorren in de estuariene siliciumcyclus (Schelde-estuarium). pp. 33-58
Middelburg, J.J.; Soetaert, K.; Herman, P.M.J.; Boschker, H.T.S.; Heip, C.H.R. (2004). Burial of nutrient in coastal sediments: the role of primary producers, in: Nielsen, S.L. et al. (Ed.) Estuarine nutrient cycling: the influence of primary producers: the fate of nutrients and biomass. Aquatic Ecology Series, 2: pp. 217-230
Middelburg, J.J.; Soetaert, K.; Herman, P.M.J.; Boschker, H.T.S.; Heip, C.H.R. (2004). Burial of nutrient in coastal sediments: the role of primary producers, in: Nielsen, S.L. et al. (Ed.) Estuarine nutrient cycling: the influence of primary producers: the fate of nutrients and biomass. Aquatic Ecology Series, 2: pp. 217-230
Van den Meersche, K.; Middelburg, J.J.; Soetaert, K.; Van Rijswijk, P. (2003). Coupling of the carbon and nitrogen metabolism of algae and bacteria: modelling a 13C pulse-chase experiment, in: Van den Meersche, K. Koppeling van koolstof- en stikstofmetabolisme van algen en bacteriën in een estuarien pelagisch ecosysteem: bepaling door modelleren van een pulse-chase experiment met 13C-labelling. pp. A1-A15
Brion, N.; De Galan, S.; Billen, G.; Garnier, J.; Middelburg, J. (2002). The nitrogen cycle in the Seine and Scheldt estuaries, in: ECSA Local Meeting: ecological structures and functions in the Scheldt Estuary: from past to future, Antwerp, Belgium October 7-10, 2002: abstract book. pp. 24
Meysman, F.J.R.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (2002). In the wake of Darwin: using ab-initio continuum mechanics to describe the influence of macro-organisms on sediments, in: Hassanizader, S.M. et al.Computational methods in water resources, vol. 1(1). Developments in Water Science, 47: pp. 587-593
Middelburg, J.J.; de Bie, M.J.M.; Nieuwenhuize, J. (2002). Methane and nitrous oxide in tidal estuaries, in: ECSA Local Meeting: ecological structures and functions in the Scheldt Estuary: from past to future, Antwerp, Belgium October 7-10, 2002: abstract book. pp. 22
Soetaert, K.; Middelburg, J.; Wijsman, J.W.M.; Herman, P.M.J.; Heip, C.H.R. (2002). Ocean margin early diagenetic processes and models, in: Wefer, G. et al. (Ed.) Ocean margin systems. pp. 157-177
Wijsman, J.W.M.; Herman, P.M.J.; Middelburg, J.J.; Soetaert, K. (2001). A model for early diagenetic processes in sediments of the continental shelf of the Black Sea, in: Wijsman, J.W.M. Early diagenetic processes in northwestern Black Sea sediments. NIOO Thesis, 8: pp. 43-66
Wijsman, J.W.M.; Middelburg, J.J.; Soetaert, K.; Herman, P.M.J. (2001). Benthic mineralization in marine environments, in: Wijsman, J.W.M. Early diagenetic processes in northwestern Black Sea sediments. NIOO Thesis, 8: pp. 7-21
Dauwe, B.; Middelburg, J.J.; Van Rijswijk, P.; Sinke, J.; Herman, P.M.J.; Heip, C.H.R. (1999). Enzymatically hydrolyzable amino acids in North Sea sediments and their possible implication for sediment nutritional values, in: Dauwe, B. Organic matter quality in North Sea sediments. pp. 39-62
de Wilde, H.P.J.; Helder, W.; Van Raaphorst, W.; Middelburg, J.J.; Sinjewel, A.; Visser, R.J.W. (1999). Methane in the Rhine estuary, its lower tributaries, and adjacent coastal waters, in: de Wilde, H.P.J. Nitrous oxide and methane in marine systems. pp. 75-97
Dauwe, B.; Middelburg, J.J. (1998). Amino acids and hexosamines as indicators of organic matter degradation state in North Sea sediments, in: Dauwe, B. (1999). Organic matter quality in North Sea sediments. pp. 89-112
Middelburg, J.J.; Klaver, G.; Nieuwenhuize, J.; Vlug, T. (1995). Carbon and nitrogen cycling in intertidal sediments near Doel, Scheldt Estuary, in: Heip, C.H.R. et al.Major biological processes in European tidal estuaries. Developments in Hydrobiology, 110: pp. 57-69
Middelburg, J.J.; Klaver, G.; Nieuwenhuize, J.; Markusse, R.; Vlug, T.; Van der Nat, F.J.W.A. (1995). Nitrous oxide emissions from estuarine intertidal sediments, in: Heip, C.H.R. et al.Major biological processes in European tidal estuaries. Developments in Hydrobiology, 110: pp. 43-55
Middelburg, J.J.; Nieuwenhuize, J.; Markusse, R.; Ohowa, B. (1995). Some preliminary results on the biogeochemistry of mangrove sediments from Gazi Bay, in: Heip, C.H.R. et al. (Ed.) Monsoons and coastal ecosystems in Kenya. pp. 51-66
Braeckman, U.; Provoost, P.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2009). Does macrofauna affect the benthic processing of a settling phytoplankton bloom?, in: Mees, J. et al. (Ed.) Book of abstracts: an overview of marine research in Belgium anno 2009. 10th VLIZ Young Scientists' Day. Special edition at the occasion of 10 years VLIZ. VLIZ Special Publication, 43: pp. 23
De Laender, F.; van Oevelen, D.; Frantsen, S.; Soetaert, K.; Janssen, C.R.; Middelburg, J.J. (2009). Seasonal PCB bioaccumulation in an Arctic marine ecosystem: a model analysis, in: Mees, J. et al. (Ed.) Book of abstracts: an overview of marine research in Belgium anno 2009. 10th VLIZ Young Scientists' Day. Special edition at the occasion of 10 years VLIZ. VLIZ Special Publication, 43: pp. 44
De Laender, F.; Soetaert, K.; Janssen, C.R.; Middelburg, J.J. (2009). Stressor effects on aquatic food web functioning: methodology and case study, in: Mees, J. et al. (Ed.) Book of abstracts: an overview of marine research in Belgium anno 2009. 10th VLIZ Young Scientists' Day. Special edition at the occasion of 10 years VLIZ. VLIZ Special Publication, 43: pp. 43
Van Colen, C.; Montserrat, F.; Middelburg, J.J.; Herman, P.M.; Andersson, M.; Rossi, F.; Gribsholt, B.; Vincx, M.; Ysebaert, T.; Degraer, S. (2009). Restoration of estuarine tidal mudflat sediments after hypoxia, in: ASLO Aquatic Sciences Meeting 2009: A Cruise Through Nice Waters, 25-30 January 2009, Nice, France. pp. 272
van den Heuvel-Greve, M.J.; van Duren, L.A.; Brasseur, S.M.; Middelburg, J.J.; Leonards, P.E.; Zabel, A.K.; Vethaak, A.D. (2009). A novel method in dietary studies using ecotoxicological data, in: ASLO Aquatic Sciences Meeting 2009: A Cruise Through Nice Waters, 25-30 January 2009, Nice, France. pp. 273
Van Oostende, N.; Boschker, H.T.S.; Middelburg, J.J.; Vyverman, W.; Sabbe, K. (2009). Bacterial influence on the extracellular carbohydrate pool in experimental Emiliania huxleyi blooms, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 6 March 2009: book of abstracts. VLIZ Special Publication, 41: pp. 73
Braeckman, U.; Provoost, P.; Gribsholt, B.; Middelburg, J.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2008). The role of macrofauna in the functioning of a sea floor: is there any seasonal, density or functional identity effect?, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium, 29 February 2008: book of abstracts. VLIZ Special Publication, 40: pp. 33, meer
Braeckman, U.; Vincx, M.; Provoost, P.; Gribsholt, B.; Middelburg, J.; Soetaert, K.; Van Gansbeke, D.; Vanaverbeke, J. (2008). The role of macrofauna in the functioning of a sea floor: is there any seasonal, density or functional identity effect?, in: World Conference on Marine Biodiversity, Valencia, Spain, 11-15 November 2008: book of abstracts. pp. 1
Van Colen, C.; Vincx, M.; Montserrat, F.; Middelburg, J.; Herman, P.; Andersson, M.; Rossi, F.; Gribsholt, B.; Ysebaert, T. (2008). Benthic and biogeochemical recovery after and induced hypoxic event: the structuring role of macrofauna succession, in: World Conference on Marine Biodiversity, Valencia, Spain, 11-15 November 2008: book of abstracts. pp. 2
Vos, M.; Soetaert, K.; Heip, C.; Middelburg, J.; Herman, P. (2008). Biodiversity, trait dynamics and ecosystem processes under gradual and catastrophic disturbance: a model analysis, in: World Conference on Marine Biodiversity, Valencia, Spain, 11-15 November 2008: book of abstracts. pp. 1
Frankignoulle, M.; Borges, A.V.; Gazeau, F.; Delille, B.; Schiettecatte, L.-S.; Gattuso, J.P.; Rochelle-Newall, E.; González-Benítez, N.; Bonilla-Findji, O.; Pizay, M.D.; Wollast, R.; Vanderborcht, J.P.; Chou, L.; Loijens, M.; Folmer, I.; Middelburg, J.J.; Van den Meersche, K.; Boschker, H.T.S.; Veuger, B.; Duarte, C.M.; Barron, C.; Navarro, N.; Iversen, N.; Elliot, M.; Hemingway, K.L.; Burdon, D.; Campuzano-Guillen, F.J.; Allen, J. (2007). Nutrients cycling and the trophic status of coastal ecosystems (EUROTROPH), in: Cieslikiewicz, W. et al. (Ed.) Proceedings of the EurOCEAN 2004: European Conference on Marine Science & Ocean Technology: Celebrating European marine science; building the European research area; communicating marine science, Galway, Ireland, 10-13 May 2004. pp. 282-283
Vandewiele, S.; Kayal, E.; van Oevelen, D.; Middelburg, J.J. (2007). An isotope dilution approach to assess the nutritional value of detritus, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 2 March 2007: book of abstracts. VLIZ Special Publication, 39: pp. 67
Frankignoulle, M.; Borges, A.V.; Gazeau, F.; Delille, B.; Schiettecatte, L.-S.; Gattuso, J.P.; Rochelle-Newall, E.; González-Benítez, N.; Bonilla-Findji, O.; Pizay, M.D.; Wollast, R.; Vanderborcht, J.P.; Chou, L.; Loijens, M.; Folmer, I.; Middelburg, J.J.; Van den Meersche, K.; Boschker, H.T.S.; Veuger, B.; Duarte, C.M.; Barron, C.; Navarro, N.; Iversen, N.; Elliot, M.; Hemingway, K.L.; Burdon, D.; Campuzano-Guillen, F.J.; Allen, J. (2004). Nutrients cycling and the trophic status of coastal ecosystems (EUROTROPH), in: European Conference on Marine Science and Ocean Technology. Celebrating European marine science: building the European research area: communicating marine science, 10th - 13th May 2004, Galway, Ireland: abstract book. pp. 118-119
Gazeau, F.; Borges, A.V.; Schiettecatte, L.-S.; Middelburg, J.; Frankignoulle, M.; Gattuso, J.P. (2004). Pelagic metabolism of the Scheldt estuary measured by the oxygen method on an annual scale, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 5 March 2004: book of abstracts. VLIZ Special Publication, 17: pp. 49
Van den Meersche, K.; Soetaert, K.; Middelburg, J.; Heip, C.H.R.; Vincx, M. (2004). The microbial food web in the estuarine water column: a link or a sink?, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 5 March 2004: book of abstracts. VLIZ Special Publication, 17: pp. 74
Galaktionov, O.S.; Meysman, F.J.R.; Middelburg, J.J. (2003). Bio-irrigation induced by Arenicola marina: classical assumptions vs. numerical modeling, in: Rullkötter, J. (Ed.) Biogeochemistry of tidal flats: Proceedings of a workshop at the Hanse Institute of Advanced Study, May 14-17, Delmenhorst, Germany. Abstract volume. Forschungszentrum Terramare Berichte, 12: pp. 59-62
Meysman, F.J.R.; Heip, C.H.R.; Herman, P.M.J.; Middelburg, J.J. (2001). MEDIA: a modelling environment for surface sediment biogeochemistry, in: VLIZ Young Scientists' Day, Brugge, Belgium 23 February 2001: book of abstracts. VLIZ Special Publication, 1: pp. 50-51
Heip, C.; Herman, P.; Middelburg, J.; Soetaert, K. (1998). Effects of physical impacts on estuarine ecosystems, in: ECSA 29 Symposium. Estuarine Research and Management in Developed and Developping countries: Joint ECSA and CERM symposium at the University of Port Elizabeth 13-17 July 1998. Abstract book. pp. 43
Van den Meersche, K.; Van Rijswijk, P.; Soetaert, K.; Middelburg, J.J. (2009). Autochthonous and allochthonous contributions to mesozooplankton diet in a tidal river and estuary: integrating carbon isotope and fatty acid constraints, in: Van den Meersche, K. Carbon flows in the planktonic food web of temperate estuaries: a combined approach using stable isotopes, biomarkers and modeling. pp. 73-96
Vandewiele, S.; Kayal, E.; van Oevelen, D.; Middelburg, J.J. (2007). An isotope dilution approach to assess the nutritional value of detritus. Netherlands Institute of Ecology (NIOO): Yerseke. 1 poster pp.
Struyf, E.; Meire, P.; Van Damme, S.; Middelburg, J. (2006). Zoetwaterschorren als siliciumbuffers in het Schelde-estuarium. Water Nieuwsbrief 24
Madani, S.; Meysman, F.J.R.; Middelburg, J.J. (2003). Biogeochemical modelling of sediments from the Santa Barbara basin (California). Berichte (Forsch.zent. Terramare) 12: 89-90
Meysman, F.J.R.; Boudreau, B.P.; Middelburg, J.J. (2003). New developments in the modelling of bioturbation in aquatic sediments: relations between local, non-local, discrete and continuous models. Berichte (Forsch.zent. Terramare) 12: 91-93
Dauwe, B.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (1999). Particulate organic matter degradation in the ocean: changes in biochemical composition and reactivity are linked, in: Dauwe, B. Organic matter quality in North Sea sediments. pp. 113-120
Dauwe, B.; Middelburg, J.J.; Herman, P.M.J. (1999). Degradability of organic matter in subtidal and intertidal sediments of the North Sea area, in: Dauwe, B. Organic matter quality in North Sea sediments. pp. 63-87
Mueller, C.E. (2014). The sum is more than its parts: key species in the functioning of cold-water coral reefcommunities. PhD Thesis. Utrecht University: [s.l.]. 158 pp. https://hdl.handle.net/1874/290254
de Kluijver, A. (2012). Carbon flows in natural plankton communities in the Anthropocene. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-90-3935-846-7. 1-150 pp. hdl.handle.net/1874/258022
Pozzato, L. (2012). Prokaryotic, protozoan and metazoan processing of organic matter in sediments: a tracer approach. PhD Thesis. Rijksuniversiteit Utrecht: [s.l.]. 154 pp. hdl.handle.net/1874/256528
Hofmann, A.F. (2009). Kwantificatie van de invloed van biogeochemische processen op de pH van natuurlijke wateren = Quantifying the influences of biogeochemical processes on pH of natural waters. PhD Thesis. University of Utrecht: Utrecht. ISBN 978-90-5744-166-0. 248 pp.
Van den Meersche, K. (2009). Carbon flows in the planktonic food web of temperate estuaries: a combined approach using stable isotopes, biomarkers and modeling. PhD Thesis. Universiteit Gent, Vakgroep Biologie, Sectie Mariene Biologie: Gent. 199 pp.
Evrard, V. (2007). Stabiele isotopen van koolstof en stikstof als merkers voor de transformaties van organisch materiaal in subtidale zandbodems = Assessing the fate of organic matter in subtidal sandy sediments using carbon and nitrogen stable isotopes as deliberate tracers. PhD Thesis. Universiteit Utrecht: Utrecht. ISBN 978-90-5744-142-4. 119 pp.
Andersson, J.H. (2006). Sedimentrespiratie in de overgang van het continentale plat naar de diepe oceaan = Respiration in ocean margin sediments. PhD Thesis. NIOO: Utrecht. ISBN 978-90-5744-148-6. 171 pp.
Veuger, B. (2006). Een nieuwe methode voor het traceren van stikstof- en koolstofstromen door bacteriën en algen in aquatische microbiële gemeenschappen: Analyse van 15N- en 13C-incorporatie in D-alanine en andere hydrolyseerbare aminozuren = A new method for tracing flows of nitorgen and carbon through bacteria and algae in aquatic microbial communities : Analysis of 15N- and 13C-incorporation into D-alanine and other hydrolysable amino acids. NIOO Thesis, 47. PhD Thesis. Universiteit Utrecht: Utrecht. ISBN 90-5744-129-2. 153 pp.
Struyf, E. (2005). The role of freshwater marshes in estuarine silica cycling (Scheldt estuary) = De rol van zoetwaterschorren in de estuariene siliciumcyclus (Schelde-estuarium). PhD Thesis. Universiteit Antwerpen: Antwerpen. 162 pp.
van Oevelen, D. (2005). The structure of marine benthic food webs: combining stable isotope techniques and inverse modeling. PhD Thesis. Rijksuniversiteit Groningen: Groningen. 143 pp., meer
Ferro, I. (2003). Cycling of iron and manganese in freshwater, estuarine and deep sea sediments. PhD Thesis. Rijksuniversiteit Groningen: Groningen. 162 pp.
Van der Nat, F.J.W.A. (2000). Methane emission from freshwater marshes. PhD Thesis. Katholieke Universiteit: Nijmegen. ISBN 90-9013529-4. 133 pp.
Andersson, M. [s.d.]. De stikstofkringloop in een troebel getijdenestuarium = Nitrogen cycling in a turbid, tidal estuary. Mededelingen Faculteit Geowetenschappen Universiteit Utrecht, 282. PhD Thesis. [S.n.]: Utrecht. ISBN 978-90-5744-147-9. 172 pp.
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