IMIS

Supplementary information accompanying the paper "Nematodes facilitate bacterial-mediated biogeochemical processes in marine sediments: a meta-transcriptomics approach"

Citeerbaar als data publicatie

Guden, R.M.E.; Haegeman, A.; Ruttink, T.; Moens, T.; Derycke, S.; Marine Biology Research Group - Ugent; Institute for Agricultural and Fisheries Research (ILVO): Belgium; (2022): Supplementary information accompanying the paper "Nematodes facilitate bacterial-mediated biogeochemical processes in marine sediments: a meta-transcriptomics approach". Marine Data Archive. https://doi.org/10.14284/575

Contact: Guden, Rodgee Mae

Beschikbaarheid:

Deze dataset valt onder een Creative Commons Naamsvermelding 4.0 Internationaal-licentie.

Beschrijving

This study used metatranscriptomics to investigate taxonomic and functional shifts in marine sediment bacterial communities in response to the addition of a nematode community. The scripts and data in this repository are accompanying the paper "Nematodes facilitate bacterial-mediated biogeochemical processes in marine sediments: a meta-transcriptomics approach" by Rodgee Mae Guden, Annelies Haegeman, Tom Ruttink, Tom Moens and Sofie Derycke (Ghent University / ILVO, Belgium). The scripts are also available on Gitlab, with an overview of the bioinformatics pipeline. meer

Our study investigated the taxonomic and functional shifts in benthic bacterial communities in response to the addition of a nematode community using a metatranscriptomic approach. We created 10 microcosms comprising sediment and natural bacterial populations, and extracted RNA at the start of the experiment. Natural nematode communities from an intertidal mudflat were then added to five of the microcosms. After seven days of incubation, RNA was extracted from the microcosms to perform metatranscriptomics analysis to investigate the taxonomic and functional composition of the samples.

Scope

Thema's:

Biologie > Benthos > Meiobenthos, Biologie > Ecologie - biodiversiteit

Kernwoorden:

Marien/Kust, , Bacteria, Carbon and nitrogen cycling, Cluster of Orthologous genes (COGs), Ecosysteem functionering, Functional annotation, Marine biogeochemistry, Nematode composition, Sediment microbiome, Taxonomic composition of bacterial community, ANE, Nederland, Westerschelde, PaulinaPolder

Geografische spreiding

ANE, Nederland, Westerschelde, PaulinaPolder

Bijdrage door

Universiteit Gent; Faculteit Wetenschappen; Vakgroep Biologie; Onderzoeksgroep Mariene Biologie (MARBIOL), meer, data creator

Guden, Rodgee Mae
Moens, Tom

Vlaamse overheid; Beleidsdomein Landbouw en Visserij; Instituut voor landbouw-, visserij en voedingsonderzoek (ILVO), meer, data creator

Haegeman, Annelies
Ruttink, Tom
Derycke, Sofie

Dataset status: Afgelopen

Data type: Data

Data oorsprong: Onderzoek

Metadatarecord aangemaakt: 2022-09-13

Informatie laatst gewijzigd: 2022-09-15