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Marine Microbiology and Biogeochemistry (NIOZ-MMB)

Parent institute: Koninklijk Nederlands Instituut voor Onderzoek der Zee; NIOZ Texel (NIOZ), more

Publications (884)

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( 797 peer reviewed )

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Alter, K.; Jacobs, P.; Delre, A.; Rasch, B.; Philippart, C.J.M.; Peck, M.A. (2024). Oyster larvae used for ecosystem restoration benefit from increased thermal fluctuation. Mar. Pollut. Bull. 198: 115750. https://dx.doi.org/10.1016/j.marpolbul.2023.115750, more
Angius, F.; Cremers, G.; Frank, J.; Witkowski, C.R.; Pol, A.; van Alen, T.A.; Jetten, M.S.M.; Op den Camp, H.J.M.; Berben, T. (2024). Gene-centered metagenome analysis of Vulcano Island soil (Aeolian archipelago, Italy) reveals diverse microbial key players in methane, hydrogen and sulfur cycles. Antonie van Leeuwenhoek 117(1): 94. https://dx.doi.org/10.1007/s10482-024-01995-5, more
Baxter, A.J.; Peterse, F.; Verschuren, D.; Maitituerdi, A.; Waldmann, N.; Sinninghe Damsté, J.S. (2024). Disentangling influences of climate variability and lake-system evolution on climate proxies derived from isoprenoid and branched glycerol dialkyl glycerol tetraethers (GDGTs): the 250 kyr Lake Chala record. Biogeosciences 21(11): 2877-2908. https://dx.doi.org/10.5194/bg-21-2877-2024, more
Baxter, A.J.; Peterse, F; Verschuren, D.; Sinninghe Damste, J.S. (2024). Assessment of branched glycerol monoalkyl glycerol tetraether (brGMGT)-based paleothermometry in the 250,000-year sediment record of Lake Chala, equatorial East Africa. Org. Geochem. 195: 104812. https://dx.doi.org/10.1016/j.orggeochem.2024.104812, more
Bolhuis, H.; Grego, M. (2024). Cryopreservation and recovery of a complex hypersaline microbial mat community. Cryobiology 114: 104859. https://dx.doi.org/10.1016/j.cryobiol.2024.104859, more
Bravo, H.; Dromard, C.R.; van der Meer, M.T.J.; Schleimer, A.; van der Meij, S.E.T. (2024). Dining on corals: stable isotope evidence for close trophic connection between gall crabs (Cryptochiridae) and their stony coral hosts. Symbiosis 92(1): 51-62. https://dx.doi.org/10.1007/s13199-023-00968-y, more
Campana, S.; Arts, M.G.I.; Díez-Vives, C.; Mueller, B.; Bang, C.; Riesgo, A.; Haas, A.F.; Muyzer, G.; de Goeij, J.M. (2024). Sponges on shifting reefs: holobionts show similar molecular and physiological responses to coral versus macroalgal food. Front. Mar. Sci. 11: 1298922. https://dx.doi.org/10.3389/fmars.2024.1298922, more
Chen, S.; Xie, Z.-X.; Yan, K.-Q.; Chen, J.-W.; Li, D.-X.; Wu, P.-F.; Peng, L.; Lin, L.; Dong, C.-M.; Zhao, Z.; Fan, G.-Y.; Liu, S.-Q.; Herndl, G.; Wang, D.-Z. (2024). Functional vertical connectivity of microbial communities in the ocean. Science Advances 10(21): eadj8184. https://dx.doi.org/10.1126/sciadv.adj8184, more
de Groot, T.; Kalenitchenko, D.; Moser, M.; Argentino, C.; Panieri, G.; Lindgren, M.; Dølven, K.O.; Ferré, B.; Svenning, M.M.; Niemann, H. (2024). Methanotroph activity and connectivity between two seep systems north off Svalbard. Front. Earth Sci. 12: 1287226. https://dx.doi.org/10.3389/feart.2024.1287226, more
De Jonge, C.; Peterse, F.; Nierop, K.G.J.; Blattmann, T.M.; Alexandre, M.; Ansanay‐Alex, S.; Austin, T.; Babin, M.; Bard, E.; Bauersachs, T.; Blewett, J.; Boehman, B.; Castañeda, I.S.; Chen, J.; Conti, M.L.G.; Contreras, S.; Cordes, J.; Davtian, N.; van Dongen, B.; Duncan, B.; Elling, F.J.; Galy, V.; Gao, S.; Hefter, J.; Hinrichs, K.‐U.; Helling, M.R.; Hoorweg, M.; Hopmans, E.; Hou, J.; Huang, Y.; Huguet, A.; Jia, G.; Karger, C.; Keely, B.J.; Kusch, S.; Li, H.; Liang, J.; Lipp, J.S.; Liu, W.; Lu, H.; Mangelsdorf, K.; Manners, H.; Martinez Garcia, A.; Menot, G.; Mollenhauer, G.; Naafs, B.D.A.; Naeher, S.; O'Connor, L.K.; Pearce, E.M.; Pearson, A.; Rao, Z.; Rodrigo‐Gámiz, M.; Rosendahl, C.; Rostek, F.; Bao, R.; Sanyal, P.; Schubotz, F.; Scott, W.; Sen, R.; Sluijs, A.; Smittenberg, R.; Stefanescu, I.; Sun, J.; Sutton, P.; Tierney, J.; Tejos, E.; Villanueva, J.; Wang, H.; Werne, J.; Yamamoto, M.; Yang, H.; Zhou, A. (2024). Interlaboratory comparison of branched GDGT temperature and pH proxies using soils and lipid extracts. Geochem. Geophys. Geosyst. 25(7): e2024GC011583. https://dx.doi.org/10.1029/2024gc011583, more
de Vogel, F.A.; Goudriaan, M.; Zettler, E.R.; Niemann, H.; Eich, A.; Weber, M.; Lott, C.; Amaral-Zettler, L.A. (2024). Biodegradable plastics in Mediterranean coastal environments feature contrasting microbial succession. Sci. Total Environ. 928: 172288. https://dx.doi.org/10.1016/j.scitotenv.2024.172288, more
Ding, S.; Grossi, V.; Hopmans, E.C.; Bale, N.J.; Cravo-Laureau, C.; Sinninghe Damsté, J.S. (2024). Nitrogen and sulfur for phosphorus: Lipidome adaptation of anaerobic sulfate-reducing bacteria in phosphorus-deprived conditions. Proc. Natl. Acad. Sci. U.S.A. 121(24): e2400711121. https://dx.doi.org/10.1073/pnas.2400711121, more
Ding, S.; Hamm, J.N.; Bale, N.J.; Sinninghe Damsté, J.S.; Spang, A. (2024). Selective lipid recruitment by an archaeal DPANN symbiont from its host. Nature Comm. 15(1): 3405. https://dx.doi.org/10.1038/s41467-024-47750-2, more
Ding, S.; von Meijenfeldt, F. A.B.; Bale, N.J.; Sinninghe Damsté, J.S; Villanueva, L. (2024). Production of structurally diverse sphingolipids by anaerobic marine bacteria in the euxinic Black Sea water column. ISME J. 18(1). https://dx.doi.org/10.1093/ismejo/wrae153, more
Egas, R.A.; Sahonero Canavesi, D.; Bale, N.J.; Koenen, M.; Yildiz, C.; Villanueva, L.; Sousa, D.Z.; Sánchez-Andrea, I. (2024). Acetic acid stress response of the acidophilic sulfate reducer Acididesulfobacillus acetoxydans. Environ. Microbiol. 26(2): e16565. https://dx.doi.org/10.1111/1462-2920.16565, more
Ersoy, S.; Beardsworth, C.E; Duran, E.; van der Meer, M.T.J.; Piersma, T.; Groothuis, T.G.G.; Bijleveld, A. (2024). Pathway for personality development: juvenile red knots vary more in diet and exploratory behaviour than adults. Anim. Behav. 208: 31-40. https://dx.doi.org/10.1016/j.anbehav.2023.11.018, more
Fadeev, E.; Hennenfeind, J.H.; Amano, C.; Zhao, Z.; Klun, K.; Herndl, G.; Tinta, T. (2024). Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter. Appl. Environ. Microbiol. 9(2). https://dx.doi.org/10.1128/msystems.01264-23, more
Golyshina, O.V.; Lunev, E.A.; Distaso, M.A.; Bargiela, R.; Gaines, M.C.; Daum, B.; Ferrer, M.; Bale, N.; Koenen, M.; Sinninghe Damsté, J.S.; Yakimov, M.; Golyshin, P.N. (2024). Oxyplasma meridianum gen. nov., sp. nov., an extremely acidophilic organotrophic member of the order Thermoplasmatales. Int. J. Syst. Evol. Microbiol. 74(8): 006499. https://dx.doi.org/10.1099/ijsem.0.006499, more
Goudriaan, M.; Zeghal, E.; Witte, H.J.; Vaksmaa, A.; Niemann, H. (2024). Differentiation of bacterial communities on five common plastics after six days of exposure to Caribbean coastal waters. Environmental Advances 16: 100518. https://dx.doi.org/10.1016/j.envadv.2024.100518, more
Greening, C.; Cabotaje, P.R.; Valentin A., L.E.; Leung, P.M.; Land, H.; Rodrigues-Oliveira, T.; Ponce-Toledo, R.I.; Senger, M.; Klamke, M.A.; Milton, M.; Lappan, R.; Mullen, S.; West-Roberts, J.; Mao, J.; Song, J.; Schoelmerich, M.; Stairs, C.W.; Schleper, C.; Grinter, R.; Spang, A.; Banfield, J.F.; Berggren, G. (2024). Minimal and hybrid hydrogenases are active from archaea. Cell 187(13): 3357-3372.e19. https://dx.doi.org/10.1016/j.cell.2024.05.032, more
Hamm, J.N.; Liao, Y.; von Kügelgen, A.; Dombrowski, N.; Landers, E.; Brownlee, C.; Johansson, E.M.V.; Whan, R.M.; Baker, M.; Baum, B.; Bharat, T.A.M.; Duggin, I.G.; Spang, A.; Cavicchioli, R. (2024). The parasitic lifestyle of an archaeal symbiont. Nature Comm. 15(1): 6449. https://dx.doi.org/10.1038/s41467-024-49962-y, more
Hättig, K.; Prokopiou, P.; Schouten, S.; van der Meer, M.T.J. (2024). Large variability and 2H-depletion of Middle Miocene to Pleistocene alkenone hydrogen isotopes in the Equatorial Pacific reflect subsurface, low light haptophyte growth. Org. Geochem. 196: 104840. https://dx.doi.org/10.1016/j.orggeochem.2024.104840, more
Hättig, K.; Schouten, S.; Louwye, S.; van der Meer, M.T.J. (2024). Stable Middle Miocene seawater isotopes in the eastern North Atlantic Ocean. Paleoceanography and Paleoclimatology 39(10): e2024PA004852. https://dx.doi.org/10.1029/2024pa004852, more
Heneghan, R.F.; Holloway-Brown, J.; Gasol, J.M.; Herndl, G.J.; Morán, X.A.G.; Galbraith, E.D. (2024). The global distribution and climate resilience of marine heterotrophic prokaryotes. Nature Comm. 15(1): 6943. https://dx.doi.org/10.1038/s41467-024-50635-z, more
Hopmans, E.C.; Grossi, V.; Sahonero Canavesi, D.; Bale, N.J.; Cravo-Laureau, C.; Sinninghe Damsté, J.S (2024). Mono- to tetra-alkyl ether cardiolipins in a mesophilic, sulfate-reducing bacterium identified by UHPLC-HRMSn: a novel class of membrane lipids. Front. Microbiol. 15: 1404328. https://dx.doi.org/10.3389/fmicb.2024.1404328, more
Karancz, S.; de Nooijer, L.J.; Brummer, G.-J.; Lattaud, J.; Haghipour, N.; Rosenthal, Y.; Reichart, G.-J. (2024). Impact of seawater inorganic carbon chemistry on element incorporation in foraminiferal shell carbonate. Geochem. Geophys. Geosyst. 25(4): e2023GC011302. https://dx.doi.org/10.1029/2023gc011302, more
Koppelle, S.; Ivankovic, M.; Bengtsson, M.M.; Preiler, C.; Huisman, J.; Brussaard, C.; Engelmann, J.C.; Ptacnik, R.; Wilken, S. (2024). Contrasting responses of different mixotrophic protists to light and nutrient availability. Limnol. Oceanogr. 69(5): 1233-1246. https://dx.doi.org/10.1002/lno.12565, more
Martin, C.; Richter, N.; Lloren, R.; Dubois, N. (2024). Impact of saponification and silver-nitrate purification on lacustrine alkenone distributions and alkenone-based indices. J. Chromatogr. 1715: 464576. https://dx.doi.org/10.1016/j.chroma.2023.464576, more
Martin, C.; Richter, N.; Lloren, R.; Amaral-Zettler, L.; Dubois, N. (2024). Machine learning reveals that sodium concentration and temperature influence alkenone occurrence in Swiss and worldwide freshwater lakes. Front. Earth Sci. 12: 1409389. https://dx.doi.org/10.3389/feart.2024.1409389, more
Masdeu-Navarro, M.; Mangot, J.-F.; Xue, L.; Cabrera-Brufau, M.; Kieber, D.J.; Rodriguez-Ros, P.; Gardner, S.G.; Bergauer, K.; Herndl, G.; Marrasé, C.; Simó, R. (2024). Diel variation of seawater volatile organic compounds, DMSP-related compounds, and microbial plankton inside and outside a tropical coral reef ecosystem. Front. Mar. Sci. 11: 1341619. https://dx.doi.org/10.3389/fmars.2024.1341619, more
Mendonça, I.R.W.; Theirlynck, T.; Zettler, E.R.; Amaral-Zettler, L.A.; Oliveira, M.C. (2024). Microbiome changes in a stranding simulation of the holopelagic macroalgae Sargassum natans and Sargassum fluitans. Ocean and Coastal Research 72: e24037. https://dx.doi.org/10.1590/2675-2824072.23111, more
Meyer, C.; Jackson, V.L.N.; Harrison, K.; Fouskari, I.; Bolhuis, H.; Artzy-Randrup, Y.A.; Huisman, J.; Monier, A.; Brussaard, C.P.D. (2024). Temperature modulates dominance of a superinfecting Arctic virus in its unicellular algal host. ISME J. 18(1): wrae161. https://dx.doi.org/10.1093/ismejo/wrae161, more
Meyer, V.D.; Pätzold, J.; Mollenhauer, G.; Castañeda, I.S; Schouten, S.; Schefuß, E. (2024). Evolution of winter precipitation in the Nile river watershed since the last glacial. Clim. Past 20(3): 523-546. https://dx.doi.org/10.5194/cp-20-523-2024, more
Moody, E.R.R.; Álvarez-Carretero, S.; Mahendrarajah, T.A.; Clark, J.W.; Betts, H.C.; Dombrowski, N.; Szánthó, L.L.; Boyle, R.A.; Daines, S.; Chen, X.; Lane, N.; Yang, Z.; Shields, G.A.; Szöllosi, G.J.; Spang, A.; Pisani, D.; Williams, T.A.; Lenton, T.M.; Donoghue, P.C.J. (2024). The nature of the last universal common ancestor and its impact on the early Earth system. Nature Ecology & Evolution 8(9): 1654-1666. https://dx.doi.org/10.1038/s41559-024-02461-1, more
Moros, M.; Kotilainen, A.T.; Snowball, I.; Neumann, T.; Perner, Kerstin; Meier, H.E.M.; Papenmeier, S.; Kolling, H.; Leipe, T.; Sinninghe Damsté, J.S.; Schneider, R. (2024). Giant saltwater inflow in AD 1951 triggered Baltic Sea hypoxia. Boreas 53(2): 125-138. https://dx.doi.org/10.1111/bor.12643, more
Orel, N.; Fadeev, E.; Herndl, G.J.; Turk, V.; Tinta, T. (2024). Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii. BMC Genom. 25(1). https://dx.doi.org/10.1186/s12864-024-10062-2, more
Peng, X.F.; Amend, A.S.; Baltar, F.; Blanco-Bercial, L.; Breyer, E.; Burgaud, G.; Cunliffe, M.; Edgcomb, V.P.; Grossart, H.-P.; Mara, P.; Masigol, H.; Pang, K.-L.; Retter, A.; Roberts, C.; van Bleijswijk, J.; Walker, A.K.; Whitner, S. (2024). Planktonic Marine Fungi: A Review. JGR: Biogeosciences 129(3): e2023JG007887. https://dx.doi.org/10.1029/2023jg007887, more
Pradel, N.; Bartoli, M.; Koenen, M.; Bale, N.; Neumann-Schaal, M.; Spröer, C.; Bunk, B.; Rohde, M.; Pester, M.; Spring, S. (2024). Description and genome analysis of a novel archaeon isolated from a syntrophic pyrite-forming enrichment culture and reclassification of Methanospirillum hungatei strains GP1 and SK as Methanospirillum purgamenti sp. nov. PLoS One 19(8): e0308405. https://dx.doi.org/10.1371/journal.pone.0308405, more
Rodríguez-Mejía, J.L.; Hidalgo-Manzano, I.A.; Muriel-Millán, L.F.; Rivera-Gomez, N.; Sahonero Canavesi, D.; Castillo, E.; Pardo-Lopez, L. (2024). A novel thermo-alkaline stable GDSL/SGNH esterase with broad substrate specificity from a deep-sea Pseudomonas sp. Mar. Biotechnol. 26(3): 447-459. https://dx.doi.org/10.1007/s10126-024-10308-w, more
Salazar Alekseyeva, K.; Herndl, G.; Baltar, F. (2024). Influence of salinity on the extracellular enzymatic activities of marine pelagic fungi. Journal of Fungi 10(2): 152. https://dx.doi.org/10.3390/jof10020152, more
Si, W.; Novak, J.; Richter, N.; Polissar, P.; Ma, R.; Santos, E.; Nirenberg, J.; Herbert, T.D.; Aubry, M.-P. (2024). Alkenone-derived estimates of Cretaceous pCO2. Geology (Boulder Colo.) 52(7): 555-559. https://dx.doi.org/10.1130/g51939.1, more
Sorokin, D.Y.; Elcheninov, A.G.; Bale, N.; Sininghe Damsté, J. ; Kublanov, I.V. (2024). Natronosalvus hydrolyticus sp. nov., a beta-1,3-glucan utilizing natronoarchaeon from hypersaline soda lakes. Syst. Appl. Microbiol. 47(2-3): 126514. https://dx.doi.org/10.1016/j.syapm.2024.126514, more
Sorokin, D.Y.; Elcheninov, A.G.; Bale, N.J.; Sinninghe Damsté, J.S; Kublanov, I.V. (2024). Natronoglomus mannanivorans gen. nov., sp. nov., beta-1,4-mannan utilizing natronoarchaea from hypersaline soda lakes. Front. Microbiol. 15: 1364606. https://dx.doi.org/10.3389/fmicb.2024.1364606, more
Sparagon, W.J.; Arts, M.G.I.; Quinlan, Z.A.; Wegley Kelly, L.; Koester, I.; Comstock, J.; Bullington, J.A.; Carlson, C.A.; Dorrestein, P.C.; Aluwihare, L.I.; Haas, A.F.; Nelson, C.E. (2024). Coral thermal stress and bleaching enrich and restructure reef microbial communities via altered organic matter exudation. Communications Biology 7(1): 160. https://dx.doi.org/10.1038/s42003-023-05730-0, more
Strniša, F.; Tinta, T.; Herndl, G.J.; Kosec, G. (2024). Dynamic population modeling of bacterioplankton community response to gelatinous marine zooplankton bloom collapse and its impact on marine nutrient balance. Prog. Oceanogr. 227: 103312. https://dx.doi.org/10.1016/j.pocean.2024.103312, more
Thobor, B.M.; Tilstra, A.; Mueller, B.; Haas, A.; Hehemann, J.-H.; Wild, C. (2024). Mucus carbohydrate composition correlates with scleractinian coral phylogeny. NPG Scientific Reports 14(1): 14019. https://dx.doi.org/10.1038/s41598-024-64828-5, more
Thompson, C.; Ortmann, A.C.; Bolhuis, H.; Makhalanyane, T.P.; Thompson, F. (2024). Harnessing marine microbiomes to develop a sustainable, all‐Atlantic bioeconomy. International Journal of Advanced Life Sciences 3(2): 163-166. https://dx.doi.org/10.1002/mlf2.12124, more
Timmis, K.; Hallsworth, J.E.; McGenity, T.J.; Armstrong, R.; Colom, M.F.; Karahan, Z.C.; Chavarría, M.; Bernal, P.; Boyd, E.S.; Ramos, J.L.; Kaltenpoth, M.; Pruzzo, C.; Clarke, G.; López‐Garcia, P.; Yakimov, M.M.; Perlmutter, J.; Greening, C.; Eloe‐Fadrosh, E.; Verstraete, W.; Nunes, O.C.; Kotsyurbenko, O.; Nikel, P.I.; Scavone, P.; Häggblom, M.M.; Lavigne, R.; Le Roux, F.; Timmis, J.K.; Parro, V.; Michán, C.; García, J.L.; Casadevall, A.; Payne, S.M.; Frey, J.; Koren, O.; Prosser, J.I.; Lahti, L.; Lal, R.; Anand, S.; Sood, U.; Offre, P.; Bryce, C.C.; Mswaka, A.Y.; Jores, J.; Kaçar, B.; Blank, L.M.; Maaßen, N.; Pope, P.B.; Banciu, H.L.; Armitage, J.; Lee, S.Y.; Wang, F.; Makhalanyane, T.P.; Gilbert, J.A.; Wood, T.K.; Vasiljevic, B.; Soberón, M.; Udaondo, Z.; Rojo, F.; Tamang, J.P.; Giraud, T.; Ropars, J.; Ezeji, T.; Müller, V.; Danbara, H.; Averhoff, B.; Sessitsch, A.; Partida‐Martínez, L.P.; Huang, W.; Molin, S.; Junier, P.; Amils, R.; Wu, X.; Ron, E.; Erten, H.; de Martinis, E.C.P.; Rapoport, A.; Öpik, M.; Pokatong, W.D.R.; Stairs, C.; Amoozegar, M.A.; Serna, J.G. (2024). A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society. Microbial Biotechnology 17(5): e14456. https://dx.doi.org/10.1111/1751-7915.14456, more
Ungerhofer, K.A.; Plümper, O.; Preiner, M.; Reichart, G.-J.; Kraal, P. (2024). Coupled carbon‑iron‑phosphorus cycling in the Rainbow hydrothermal vent field. Chem. Geol. 650: 121994. https://dx.doi.org/10.1016/j.chemgeo.2024.121994, more
Vaksmaa, A.; Vielfaure, H.; Polerecky, L.; Kienhuis, M.V.M.; van der Meer, M.T.J.; Pflüger, T.; Egger, M.; Niemann, H. (2024). Biodegradation of polyethylene by the marine fungus Parengyodontium album. Sci. Total Environ. 934: 172819. https://dx.doi.org/10.1016/j.scitotenv.2024.172819, more
van Kemenade, Z.R.; Erdem, Z.; Hopmans, E.C.; Sinninghe Damsté, J.S; Rush, D. (2024). Loss of nitrogen via anaerobic ammonium oxidation (anammox) in the California Current system during the late Quaternary. Biogeosciences 21(6): 1517-1532. https://dx.doi.org/10.5194/bg-21-1517-2024, more
Varma, D.; van der Meer, M.T.J.; Reichart, G.-J.; Schouten, S. (2024). Impact of water depth on the distributions and proxies of isoprenoidal hydroxylated GDGTs in the Mediterranean Sea and the Red Sea. Org. Geochem. 194: 104780. https://dx.doi.org/10.1016/j.orggeochem.2024.104780, more
Varma, D.; Hopmans, E.C.; van Kemenade, Z.R.; Kusch, S.; Berg, S.; Bale, N.J.; Sangiorgi, F.; Reichart, G.-J.; Sinninghe Damsté, J.S; Schouten, S. (2024). Evaluating isoprenoidal hydroxylated GDGT-based temperature proxies in surface sediments from the global ocean. Geochim. Cosmochim. Acta 370: 113-127. https://dx.doi.org/10.1016/j.gca.2023.12.019, more
Wang, K.J.; Huang, Y.; Kartzinel, T.R.; Majaneva, M.; Richter, N.; Liao, S.; Andresen, C.S.; Vermassen, F. (2024). Group 2i Isochrysidales thrive in marine and lacustrine systems with ice cover. NPG Scientific Reports 14(1): 11449. https://dx.doi.org/10.1038/s41598-024-62162-4, more
Williams, T.A.; Davín, A.A.; Szánthó, L.L.; Stamatakis, A.; Wahl, N.A.; Woodcroft, B.J.; Soo, R.M.; Eme, L.; Sheridan, P.; Gubry-Rangin, C.; Spang, A.; Hugenholtz, P.; Szöllosi, G.J. (2024). Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution. ISME J. 18(1): wrae129. https://dx.doi.org/10.1093/ismejo/wrae129, more
Witkowski, C.R.; von der Heydt, A.S.; Valdes, P.J.; van der Meer, M.T.J.; Schouten, S.; Sinninghe Damsté, J.S. (2024). Continuous sterane and phytane δ13C record reveals a substantial pCO2 decline since the mid-Miocene. Nature Comm. 15(1): 5192. https://dx.doi.org/10.1038/s41467-024-47676-9, more
Wu, L.-Y.; Wijesekara, Y.; Piedade, G.; Pappas, N.; Brussaard, C.P.D.; Dutilh, B.E. (2024). Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome Biol. 25(1): 97. https://dx.doi.org/10.1186/s13059-024-03236-4, more
Yadav, S.; Koenen, M.; Bale, N.; Reitsma, W.; Engelmann, J.C.; Stefanova, K.; Sinninghe Damsté, J.S; Villanueva, L. (2024). Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria. Microbiome 12(1): 98. https://dx.doi.org/10.1186/s40168-024-01816-x, more
Zhang, X.; Wang, Y.; Wang, Z.; Zhao, M.; Fang, Y.; Ding, S.; Xiao, W.; Yu, C.; Wang, X.; Xu, Y. (2024). Heterogenous distribution and burial flux of black carbon in Chinese lakes and its global implication. Sci. Total Environ. 906: 167687. https://dx.doi.org/10.1016/j.scitotenv.2023.167687, more
Zhao, Z.; Amano, C.; Reinthaler, T.; Orellana, M.V.; Herndl, G. (2024). Substrate uptake patterns shape niche separation in marine prokaryotic microbiome. Science Advances 10(20): eadn5143. https://dx.doi.org/10.1126/sciadv.adn5143, more
Zhao, Z.; Amano, C.; Reinthaler, T.; Baltar, F.; Orellana, M.V.; Herndl, G.J. (2024). Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean. Nature Comm. 15(1): 6411. https://dx.doi.org/10.1038/s41467-024-50867-z, more
Zhao, Z.; Baltar, F.; Herndl, G. (2024). Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes. Environ. Microbiol. 12(5). https://dx.doi.org/10.1128/spectrum.03036-23, more
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Heinzelmann, S.M.; Bale, N.J.; Villanueva, L.; Sinke-Schoen, D.; Philippart, C.J.M.; Sinninghe Damsté, J.S.; Schouten, S.; Van der Meer, M.T.J. (2016). Seasonal changes in the D  /  H ratio of fatty acids of pelagic microorganisms in the coastal North Sea. Biogeosciences 13: 5527-5539. https://dx.doi.org/10.5194/bg-13-5527-2016, more
Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2016). The effect of improved chromatography on GDGT-based palaeoproxies. Org. Geochem. 93: 1-6. dx.doi.org/10.1016/j.orggeochem.2015.12.006, more
Ismail, A.; Ktari, L.; Bolhuis, H.; Ahmed, M.; Boudabbous, A.; Stal, L.J.; Cretoiu, M.S.; El Bour, M. (2016). Antimicrobial Activities of Bacteria Associated with the Brown Alga Padina pavonica. Front. Microbiol. 7: 1072. dx.doi.org/10.3389/fmicb.2016.01072, more
Johnson, T.C.; Werne, J.P.; Brown, E.T.; Abbott, A.; Berke, M.; Steinman, B.E.; Halbur, J.; Contreras, S.; Grosshuesch, S.; Deino, A.; Lyons, R.P.; Scholz, C.A.; Schouten, S.; Sinninghe Damsté, J.S. (2016). A progressively wetter climate in southern East Africa over the past 1.3 million years. Nature (Lond.) 537(7619): 220-224. dx.doi.org/10.1038/nature19065, more
Jung, M.Y.; Kim, J.G.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Madsen, E.L.; Kim, S.J.; Hong, H.; Si, O.-J.; Kerou, M.; Schleper, C.; Rhee, S.K. (2016). A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment. Environmental Microbiology Reports 8(6): 983–992. dx.doi.org/10.1111/1758-2229.12477, more
Kandiano, E.S.; Van der Meer, M.T.J.; Bauch, H.A.; Helmke, J.; Sinninghe Damsté, J.S.; Schouten, S. (2016). A cold and fresh ocean surface in the Nordic Seas during MIS 11: Significance for the future ocean. Geophys. Res. Lett. 43(20): 10,929–10,937. https://dx.doi.org/10.1002/2016GL070294, more
Kim, J.G.; Park, S.J.; Sinninghe Damsté, J.S.; Schouten, S.; Rijpstra, W.I.C.; Jung, M.Y.; Kim, S.J.; Gwak, J.-H.; Hong, H.; Si, O.-J.; Lee, S.H.; Madsen, E.L.; Rhee, S.K. (2016). Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea. Proc. Natl. Acad. Sci. U.S.A. 113(28): 7888–7893. dx.doi.org/10.1073/pnas.1605501113, more
Kim, J.-H.; Villanueva, L.; Zell, C.; Sinninghe Damsté, J.S. (2016). Biological source and provenance of deep-water derived isoprenoid tetraether lipids along the Portuguese continental margin. Geochim. Cosmochim. Acta 172: 177–204. dx.doi.org/10.1016/j.gca.2015.09.010, more
Kulichevskaya, I.S.; Ivanova, A.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2016). Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov. Int. J. Syst. Evol. Microbiol. 66: 837-844. dx.doi.org/ 10.1099/ijsem.0.000799 , more
Kusch, S.; Rethemeyer, J.; Hopmans, E.C.; Wacker, L.; Mollenhauer, G. (2016). Factors influencing 14C concentrations of algal and archaeal lipids and their associated sea surface temperature proxies in the Black Sea. Geochim. Cosmochim. Acta 188: 35–57. dx.doi.org/10.1016/j.gca.2016.05.025, more
Levy, R.; Schouten, S.; SMS Sci Team (2016). Antarctic ice sheet sensitivity to atmospheric CO₂ variations in the early to mid-Miocene. Proc. Natl. Acad. Sci. U.S.A. 113(13): 3453–3458. dx.doi.org/10.1073/pnas.1516030113, more
Lipsewers, Y.A.; Hopmans, E.C.; Meysman, F.J.R.; Sinninghe Damsté, J.S.; Villanueva, L. (2016). Abundance and diversity of denitrifying and anammox bacteria in seasonally hypoxic and sulfidic sediments of the saline Lake Grevelingen. Front. Microbiol. 7: 1661. https://dx.doi.org/10.3389/fmicb.2016.01661, more
Lüke, C.; Speth, D.R.; Kox, M.A.R.; Villanueva, L.; Jetten, M.S.M. (2016). Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone. PeerJ 4: e1924. dx.doi.org/10.7717/peerj.1924, more
Maat, D.; Bale, N.J.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S.; Brussaard, C.P.D. (2016). Increasing P limitation and viral infection impact lipid remodeling of the picophytoplankter Micromonas pusilla. Biogeosciences 13(5): 1667-1676. http://dx.doi.org/10.5194/bg-13-1667-2016, more
Maat, D.S.; van Bleijswijk, J.D.L.; Witte, H.J.; Brussaard, C.P.D. (2016). Virus production in phosphorus-limited Micromonas pusilla stimulated by a supply of naturally low concentrations of different phosphorus sources, far into the lytic cycle. FEMS Microbiol. Ecol. 92: fiw136. dx.doi.org/10.1093/femsec/fiw136, more
Maat, D.S.; de Blok, R.; Brussaard, C.P.D. (2016). Combined Phosphorus Limitation and Light Stress Prevent Viral Proliferation in the Phytoplankton Species Phaeocystis globosa, but Not in Micromonas pusilla. Front. Mar. Sci. 3: 160. dx.doi.org/10.3389/fmars.2016.00160, more
Maat, D.S.; Brussaard, C.P.D. (2016). Both phosphorus- and nitrogen limitation constrain viral proliferation in marine phytoplankton. Aquat. Microb. Ecol. 77(2): 87-97. dx.doi.org/10.3354/ame01791, more
Mao, J.; Nierop, K.G.J.; Rietkerk, M.; Sinninghe Damsté, J.S.; Dekker, S.C. (2016). The influence of vegetation on soil water repellency-markers and soil hydrophobicity. Sci. Total Environ. 566-567: 608-620. dx.doi.org/10.1016/j.scitotenv.2016.05.077, more
Mojica, K.D.A.; Huisman, J.; Wilhelm, S.W.; Brussaard, C.P.D. (2016). Latitudinal variation in virus-induced mortality of phytoplankton across the North Atlantic Ocean. ISME J. 10(2): 500-513. https://dx.doi.org/10.1038/ismej.2015.130, more
Moore, E.K.; Hopmans, E.C.; Rijpstra, W.I.C.; Villanueva, L.; Sinninghe Damsté, J.S. (2016). Elucidation and identiﬁcation of amino acid containing membrane lipids using liquid chromatography/high-resolution mass spectrometry. Rapid Comm. Mass Spectrom. 30(6): 739–750. dx.doi.org/10.1002/rcm.7503, more
Mueller, B.; den Haan, J.; Visser, P.M.; Vermeij, M.J.A.; van Duyl, F.C. (2016). Effect of light and nutrient availability on the release of dissolved organic carbon (DOC) by Caribbean turf algae. NPG Scientific Reports 6: 23248. dx.doi.org/10.1038/srep23248, more
Nieto-Moreno, V.; Rohrmann, A.; van der Meer, M.T.J.; Sinninghe Damsté, J.S.; Sachse, D.; Tofelde, S.; Niedermeyer, E.M.; Strecker, M.R.; Mulch, A. (2016). Elevation-dependent changes in n-alkane δD and soil GDGTs across the South Central Andes. Earth Planet. Sci. Lett. 453: 234–242. dx.doi.org/10.1016/j.epsl.2016.07.049, more
Oshkin, I.Y.; Belova, S.E.; Danilova, O.V.; Miroshnikov, K.K.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Liesack, W.; Dedysh, S.N. (2016). Methylovulum psychrotolerans sp. nov., a cold-adapted methanotroph from low-temperature terrestrial environments and emended description of the genus Methylovulum. Int. J. Syst. Evol. Microbiol. 66: 2417-2423. dx.doi.org/ 10.1099/ijsem.0.001046 , more
Pascal, P.-Y.; Gros, O.; Boschker, H.T.S. (2016). Temporal fluctuations in the trophic role of large benthic sulfur bacteria in mangrove sediment. Food Webs 7: 20-28. dx.doi.org/10.1016/j.fooweb.2016.04.001, more
Piquet, A.M.-T.; Maat, D.S.; Confurius-Guns, V.; Sintes, E.; Herndl, G.; van de Poll, W.H.; Wiencke, C.; Buma, A.G.J.; Bolhuis, H. (2016). Springtime dynamics, productivity and activity of prokaryotes in two Arctic fjords. Polar Biol. 39: 1749–1763. dx.doi.org/10.1007/s00300-015-1866-x, more
Rix, L.; de Goeij, J.M.; Mueller, C.E.; Struck, U.; Middelburg, J.J.; van Duyl, F.C.; Al-Horani, F.A.; Wild, C.; Naumann, M.S.; Van Oevelen, D. (2016). Coral mucus fuels the sponge loop in warm- and cold-water coral reef ecosystems. NPG Scientific Reports 6(18715): 11 pp. http://dx.doi.org/10.1038/srep18715, more
Rodrigo-Gámiz, M.; Rampen, S.W.; Schouten, S.; Sinninghe Damsté, J.S. (2016). The impact of oxic degradation on long chain alkyl diol distributions in Arabian Sea surface sediments. Org. Geochem. 100: 1-9. dx.doi.org/10.1016/j.orggeochem.2016.07.003, more
Salamanca Villegas, S.; van Soelen, E.; Teunissen van Manen, M.L.; Flantua, S.G.A.; Santos, R.V.; Roddaz, M.; Dantas, E.L.; van Loon, E.; Sinninghe Damsté, J.S.; Kim, J.-H.; Hoorn, C. (2016). Amazon forest dynamics under changing abiotic conditions in the early Miocene (Colombian Amazonia). J. Biogeogr. 43(12): 2424–2437. dx.doi.org/10.1111/jbi.12769, more
Sciscio, L.; Tsikos, H.; Roberts, D.L.; Scott, L.; van Breugel, Y.; Sinninghe Damsté, J.S.; Schouten, S.; Grocke, D.R. (2016). Miocene climate and vegetation changes in the Cape Peninsula, South Africa: Evidence from biogeochemistry and palynology. Palaeogeogr. Palaeoclimatol. Palaeoecol. 445: 124-137. dx.doi.org/10.1016/j.palaeo.2015.12.014, more
Sinninghe Damsté, J.S. (2016). Spatial heterogeneity of sources of branched tetraethers in shelf systems: The geochemistry of tetraethers in the Berau River delta (Kalimantan, Indonesia). Geochim. Cosmochim. Acta 186: 13-31. dx.doi.org/10.1016/j.gca.2016.04.033, more
Sintes, E.; De Corte, D.; Haberleitner, E.; Herndl, G. (2016). Geographic Distribution of Archaeal Ammonia Oxidizing Ecotypes in the Atlantic Ocean. Front. Microbiol. 7: 77. dx.doi.org/10.3389/fmicb.2016.00077, more
Slagter, H.A.; Gerringa, L.J.A.; Brussaard, C.P.D. (2016). Phytoplankton Virus Production Negatively Affected by Iron Limitation. Front. Mar. Sci. 3: 156. dx.doi.org/10.3389/fmars.2016.00156, more
Sobrinho, R.L; Bernardes, M.C.; Abril, G.; Kim, J.-H.; Zell, C.I.; Mortillaro, J.M.; Meziane, T.; Moreira-Turcq, P.; Sinninghe Damsté, J.S. (2016). Spatial and seasonal contrasts of sedimentary organic matter in floodplain lakes of the central Amazon basin. Biogeosciences 13: 467-482. dx.doi.org/10.5194/bg-13-467-2016, more
Sorokin, D.Y.; Rakitin, A.L.; Gumerov, V.M.; Beletsky, A.V.; Sinninghe Damsté, J.S.; Mardanov, A.V.; Ravin, N.V. (2016). Phenotypic and Genomic Properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., A Haloalkaliphilic Anaerobic Chitinolytic Bacterium Representing a Novel Class in the Phylum Fibrobacteres. Front. Microbiol. 7: 407. dx.doi.org/10.3389/fmicb.2016.00407, more
Sorokin, D.Y.; Kublanov, I.V.; Yakimov, M.M.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S. (2016). Halanaeroarchaeum sulfurireducens gen. nov., sp. nov., the first obligately anaerobic sulfur-respiring haloarchaeon, isolated from a hypersaline lake. Int. J. Syst. Evol. Microbiol. 66(6): 2377-2381. dx.doi.org/10.1099/ijsem.0.001041, more
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Steenhauer, L.M.; Wierenga, J.; Carreira, C; Limpens, R.W.A.L.; Koster, A.J.; Pollard, P.C.; Brussaard, C.P.D. (2016). Isolation of cyanophage CrV infecting Cylindrospermopsis raciborskii and the influence of temperature and irradiance on CrV proliferation . Aquat. Microb. Ecol. 78: 11-23. dx.doi.org/10.3354/ame01800, more
Svensson, E.; Schouten, S.; Hopmans, E.C.; Middelburg, J.J.; Sinninghe Damsté, J.S. (2016). Factors Controlling the Stable Nitrogen Isotopic Composition (δ15N) of Lipids in Marine Animals. PLoS One 11(1): e0146321. https://dx.doi.org/10.1371/journal.pone.0146321, more
van Bree, L.G.J.; Rijpstra, W.I.C.; Al-Dhabi, N.A.; Verschuren, D.; Sinninghe Damsté, J.S.; de Leeuw, J.W. (2016). Des-A-lupane in an East African lake sedimentary record as a new proxy for the stable carbon isotopic composition of C₃ plants. Org. Geochem. 101: 132–139. dx.doi.org/10.1016/j.orggeochem.2016.09.003, more
van der Meer, R.; de Boer, M.K.; Liebich, V.; ten Hallers, C.; Veldhuis, M.; Ree, K. (2016). Ballast Water Risk Indication for the North Sea. Coast. Manage. 44(6): 547-568. dx.doi.org/10.1080/08920753.2016.1233794, more
van Soelen, E.; Ohkouchi, N.; Suga, H.; Sinninghe Damsté, J.S.; Reichart, G.-J. (2016). A late Holocene molecular hydrogen isotope record of the East Asian Summer Monsoon in Southwest Japan. Quatern. Res. 86(3): 287–294. dx.doi.org/10.1016/j.yqres.2016.07.005, more
van Walraven, L.; Driessen, F.; van Bleijswijk, J.; Bol, A.; Luttikhuizen, P.C.; Coolen, J.; Bos, O.G.; Gittenberger, A.; Schrieken, N.; Langenberg, V.T.; van der Veer, H.W. (2016). Where are the polyps? Molecular identification, distribution and population differentiation of Aurelia aurita jellyfish polyps in the southern North Sea area. Mar. Biol. (Berl.) 163: 172. dx.doi.org/10.1007/s00227-016-2945-4, more
Vasquez Cardenas, D.; Organo Quintana, C.; Meysman, F.J.R.; Kristensen, E.; Boschker, H.T.S. (2016). Species-specific effects of two bioturbating polychaetes on sediment chemoautotrophic bacteria. Mar. Ecol. Prog. Ser. 549: 55-68. dx.doi.org/10.3354/meps11679, more
Vellekoop, J.; Esmeray-Senlet, S.; Miller, K.G.; Browning, J.V.; Sluijs, A.; van de Schootbrugge, B.; Sinninghe Damsté, J.S.; Brinkhuis, H. (2016). Evidence for Cretaceous-Paleogene boundary bolide “impact winter” conditions from New Jersey, USA. Geology (Boulder Colo.) 44(8): 619-622. https://dx.doi.org/10.1130/G37961.1, more
Visser, P.M.; Verspagen, J.M.H.; Sandrini, G.; Stal, L.J.; Matthijs, H.C.P.; Davis, T.W.; Pearl, H.W.; Huisman, J. (2016). How rising CO₂ and global warming may stimulate harmful cyanobacterial blooms. Harmful Algae 54: 145–159. dx.doi.org/10.1016/j.hal.2015.12.006, more
Warden, L.; Van der Meer, M.T.J.; Moros, M.; Sinninghe Damsté, J.S. (2016). Sedimentary alkenone distributions reflect salinity changes in the Baltic Sea over the Holocene. Org. Geochem. 102: 30–44. dx.doi.org/10.1016/j.orggeochem.2016.09.007, more
Warden, L.; Kim, J.-H; Zell, C.; Vis, G.-J.; de Stigter, H.C.; Bonnin, J.; Sinninghe Damste, J.S. (2016). Examining the provenance of branched GDGTs in the Tagus River drainage basin and its outflow into the Atlantic Ocean over the Holocene to determine their usefulness for paleoclimate applications. Biogeosciences 13: 5719-5738. dx.doi.org/10.5194/bg-13-5719-2016, more
Webb, A.L.; Leedham-Elvidge, E.; Hughes, C.; Hopkins, F.; Malin, G.; Bach, L.T.; Schulz, K.; Crawfurd, K.; Brussaard, C.P.D.; Stuhr, A.; Riebesell, U.; Liss, P.S. (2016). Effect of ocean acidification and elevated fCO₂ on trace gas production by a Baltic Sea summer phytoplankton community. Biogeosciences 13: 4595–4613. https://dx.doi.org/10.5194/bg-13-4595-2016, more
Wigington, C.H.; Sonderegger, D.; Brussaard, C.P.D.; Buchan, A.; Finke, J.F.; Fuhrman, J.A.; Lennon, J.T.; Middelboe, M.; Suttle, C.A.; Stock, C.; Wilson, W.H.; Wommack, K.E.; Wilhelm, S.W.; Weitz, J.S. (2016). Re-examination of the relationship between marine virus and microbial cell abundances. Nature Microbiology 1: 15024. https://dx.doi.org/10.1038/NMICROBIOL.2015.24, more
Arrieta, J.M.; Mayol, E.; Hansman, R.L.; Herndl, G.J.; Dittmar, T.; Duarte, C.M. (2015). Response to Comment on "Dilution limits dissolved organic carbon utilization in the deep ocean". Science (Wash.) 350(6267): 1483-1483. http://dx.doi.org/10.1126/science.aac7249, more
Blanchet, C.; Contoux, C.; Leduc, G. (2015). Runoff and precipitation dynamics in the Blue and White Nile catchments during the mid-Holocene: A data-model comparison. Quat. Sci. Rev. 130: 222–230. dx.doi.org/10.1016/j.quascirev.2015.07.014, more
Carreira, C; Staal, M.; Middelboe, M.; Brussaard, C.P.D. (2015). Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms. Limnol. Oceanogr., Methods 13(4): 169–177. dx.doi.org/10.1002/lom3.10016, more
Carreira, C; Piel, T; Staal, M.; Stuut, J.-B; Middelboe, M.; Brussaard, C.P.D. (2015). Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats. SpringerPlus 4: 239. dx.doi.org/10.1186/s40064-015-0977-8, more
Carreira, C; Staal, M.; Falkoski, D.; de Vries, R.P.; Middelboe, M.; Brussaard, C.P.D. (2015). Disruption of photoautotrophic intertidal mats by filamentous fungi. Environ. Microbiol. 17(8): 2910-2921. dx.doi.org/ 10.1111/1462-2920.12835, more
Carreira, C; Staal, M.; Middelboe, M.; Brussaard, C.P.D. (2015). Counting viruses and bacteria in photosynthetic microbial mats. Appl. Environ. Microbiol. 81(6): 2149-2155. dx.doi.org/10.1128/AEM.02863-14, more
Kasper, S.; van der Meer, M.T.J.; Castañeda, I.S; Tjallingii, R.; Brummer, G.J.A.; Sinninghe Damsté, J.S.; Schouten, S. (2015). Testing the alkenone D/H ratio as a paleo indicator of sea surface salinity in a coastal ocean margin (Mozambique Channel). Org. Geochem. 78: 62-68. dx.doi.org/10.1016/j.orggeochem.2014.10.011, more
Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2015). Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach. Est., Coast. and Shelf Sci. 165: 117-127. https://dx.doi.org/10.1016/j.ecss.2015.09.010, more
Mojica, K.D.A.; van de Poll, W.H.; Kehoe, M.; Huisman, J.; Timmermans, K.R.; Buma, A.G.J.; Van der Woerd, H.J.; Hahn-Woernle, L.; Dijkstra, H.A.; Brussaard, C.P.D. (2015). Phytoplankton community structure in relation to vertical stratification along a north-south gradient in the Northeast Atlantic Ocean. Limnol. Oceanogr. 60(5): 1498–1521. https://dx.doi.org/10.1002/lno.10113, more
Svensson, E.; Schouten, S.; Stam, A.; Middelburg, J.J.; Sinninghe Damsté, J.S. (2015). Compound-specific stable isotope analysis of nitrogen-containing intact polar lipids. Rapid Comm. Mass Spectrom. 29(23): 2263–2271. dx.doi.org/10.1002/rcm.7393, more
Blanchet, C.; Frank, M.; Schouten, S. (2014). Asynchronous Changes in Vegetation, Runoff and Erosion in the Nile River Watershed during the Holocene. PLoS One 9(12): e115958. dx.doi.org/10.1371/journal.pone.0115958, more
Kunihiro, T.; Veuger, B.; Vasquez Cardenas, D.; Pozzato, L.; Le Guitton, M.; Moriya, K.; Kuwae, M.; Omori, K.; Boschker, H.T.S.; Van Oevelen, D. (2014). Phospholipid-Derived Fatty Acids and Quinones as Markers for Bacterial Biomass and Community Structure in Marine Sediments. PLoS One 9(4): e96219. dx.doi.org/10.1371/journal.pone.0096219, more
Mojica, K.D.A.; Evans, C.; Brussaard, C.P.D. (2014). Flow cytometric enumeration of marine viral populations at low abundances. Aquat. Microb. Ecol. 71(3): 203–209. http://dx.doi.org/10.3354/ame01672, more
Mojica, K.D.A.; Brussaard, C.P.D. (2014). Factors affecting virus dynamics and microbial host-virus interactions in marine environments. FEMS Microbiol. Ecol. 89(3): 495–515. https://dx.doi.org/10.1111/1574-6941.12343, more
Blanchet, C.; Tjallingii, R.; Frank, M.; Lorenzen, J.; Reitz, A.; Brown, K.; Feseker, T.; Brückmann, W. (2013). High- and low-latitude forcing of the Nile River regime during the Holocene inferred from laminated sediments of the Nile deep-sea fan. Earth Planet. Sci. Lett. 364: 98-110. dx.doi.org/10.1016/j.epsl.2013.01.009, more
Brussaard, C.P.D.; Noordeloos, A.A.M.; Witte, H.; Collenteur, M.C.J; Schulz, K.G.; Ludwig, A.; Riebesell, U. (2013). Arctic microbial community dynamics influenced by elevated CO₂ levels. Biogeosciences 10(2): 719-731. dx.doi.org/10.5194/bg-10-719-2013, more
Lengger, S.K.; Kraaij, M.; Tjallingii, R.; Baas, M.; Stuut, J.-B.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2013). Differential degradation of intact polar and core glycerol dialkyl glycerol tetraether lipids upon post-depositional oxidation. Org. Geochem. 65: 83-93. dx.doi.org/10.1016/j.orggeochem.2013.10.004, more
Veuger, B.; Pitcher, A.; Schouten, S.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2013). Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea. Biogeosciences 10(3): 1775-1785. dx.doi.org/10.5194/bg-10-1775-2013, more
Brandsma, J.; Hopmans, E.C.; Philippart, C.J.M.; Veldhuis, M.J.W.; Schouten, S.; Sinninghe Damsté, J.S.S. (2012). Low temporal variation in the intact polar lipid composition of North Sea coastal marine water reveals limited chemotaxonomic value. Biogeosciences 9(3): 1073-1084. dx.doi.org/10.5194/bg-9-1073-2012, more
Fallet, U.; Castañeda, I.S; Henry-Edwards, A; Richter, T.O.; Boer, W.; Schouten, S.; Brummer, G.J. (2012). Sedimentation and burial of organic and inorganic temperature proxies in the Mozambique Channel, SW Indian Ocean. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 59: 37-53. dx.doi.org/10.1016/j.dsr.2011.10.002, more
Liebich, V.; Stehouwer, P.P.; Veldhuis, M. (2012). Re-growth of potential invasive phytoplankton following UV-based ballast water treatment. Aquat. Invasions 7(1): 29-36. dx.doi.org/10.3391/ai.2012.7.1.004, more
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Biggs, T. (2020). Polar phytoplankton dynamics in relation to virus and zooplankton predators. PhD Thesis. University of Amsterdam: Amsterdam. ISBN 9789491407932. 290 pp. https://hdl.handle.net/11245.1/a1e25708-9a5c-40f7-b278-c60f428c2d58, more
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Reiche, S. (2020). The impact of diagenesis and sequestration on long-chain diols and related indicies. PhD Thesis. University of Utrecht: Utrecht. ISBN 9789463326490. 127 pp., more
Suominen, S. (2020). The role of microorganisms in the cycling of organic matter in anoxic marine environments. A culture-independent approach. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6332-643-8. https://doi.org/10.33540/117, more
van Duyl, F.C.; Meesters, E.H. (2020). Cruise report RV Pelagia 64PE465 : Sinkhole expedition, 5 December - 18 December 2019 Guadeloupe-Guadeloupe. NIOZ Royal Institute for Sea Research: Texel. 79 pp., more
van Grinsven, S. (2020). Microorganisms and electron acceptors affecting methane oxidation in freshwater and marine systems. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6332-631-5. 182 pp. https://doi.org/10.33540/33, more
Witkowski, C.R. (2020). Reconstructing past atmospheric CO₂ levels from the stable carbon isotopic composition of general algal biomarkers. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6380-644-2. https://hdl.handle.net/1874/389900, more
Zettler, E.R.; Amaral-Zettler, L.A. (2020). The (Un)Natural History of the “Plastisphere,” A New Marine Ecosystem, in: Streit-Bianchi, M. et al. Mare Plasticum - The Plastic Sea. pp. 73-88. https://doi.org/10.1007/978-3-030-38945-1_4, more
Besseling, M. (2019). Sources and genetic controls of lipid biomarkers involved in paleotemperature proxies. Utrecht Studies in Earth Sciences, 198. PhD Thesis. Utrecht University: Utrecht. ISBN 978-90-6266-556-3. https://hdl.handle.net/1874/386074, more
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de Bakker, D.M. (2019). 40 Years of change on the coral reefs of Curaçao and Bonaire. PhD Thesis. Wageningen University: Wageningen. ISBN 9789463434041. 192 pp. https://dx.doi.org/10.18174/468014, more
de Bar, M. (2019). Constraints on the use of long-chain diols as environmental proxies. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6332-471-7. https://hdl.handle.net/1874/379769, more
Lattaud, J. (2019). Sources and proxy potential of long-chain diols in marine and continental settings. PhD Thesis. Utrecht University: Utrecht. ISBN 9789402814507. 156 pp., more
Schreuder, L.T. (2019). Tracing ancient biomass burning using levoglucosan in marine and lake sediments. PhD Thesis. Utrecht University: Utrecht. ISBN 9789402814569. 148 pp., more
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Weiss, G.M. (2019). Hydrogen isotope composition of algal chemical fossils: a tool for reconstructing paleo sea surface salinity. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6375-466-8. 150 pp. https://hdl.handle.net/1874/384352, more
Dedysh, S.N.; Sinninghe Damsté, J.S. (2018). Acidobacteria. Encycl. Life Sci. (Online) January. https://dx.doi.org/10.1002/9780470015902.a0027685, more
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Sollai, M. (2018). Lipids as indicators of nitrogen cycling in present and past anoxic oceans. PhD Thesis. Utrecht University: Utrecht. ISBN 9789062665051. 271 pp. https://hdl.handle.net/1874/367934, more
van Duyl, F.C.; Meesters, E.H. (2018). Cruise report RV Pelagia 64PE433 : Saba, St Eustatius and Saba Bank Benthic habitat mapping, and Benthic–Pelagic coupling, 26 February - 10 March 2018, St Maarten-St Maarten (NICO expedition leg 6). NIOZ: Texel. 60 pp., more
Lipsewers, Y.A. (2017). Role of chemolithoautotrophic microorganisms involved in nitrogen and sulfur cycling in coastal marine sediments. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-6266-4924. 225 pp. https://hdl.handle.net/1874/357552, more
Stal, L.J.; Bolhuis, H.; Cretoiu, M.S. (2017). Phototrophic Microbial Mats, in: Hallenbeck, P.C. Modern Topics in the Phototrophic Prokaryotes : environmental and applied aspects . pp. 295-321. https://dx.doi.org/10.1007%2F978-3-319-46261-5_9, more
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Bolhuis, H.; Cretoiu, M.S. (2016). What is so special about marine microorganisms? Introduction to the marine microbiome - from diversity to biotechnological potential, in: Stal, L.J. et al. (Ed.) The marine microbiome. An untapped source of biodiversity and biotechnological potential. pp. 3-20. dx.doi.org/10.1007/978-3-319-33000-6_1, more
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Maat, D.S. (2016). Ecophysiological aspects of algal host: virus interactions in a changing ocean. PhD Thesis. University of Amsterdam: Amsterdam. ISBN 9789491407383. 232 pp. https://hdl.handle.net/11245/1.547586, more
Moerdijk-Poortvliet, T.C.W. (2016). Carbon cycling in benthic diatom mats: Novel applications of LC/IRMS. PhD Thesis. Universiteit van Amsterdam: Amsterdam. ISBN 978-94-91407-44-4. 270 pp. hdl.handle.net/11245/1.547921, more
Rodríguez-Valera, F.; Martin-Cuadrado, A.-B.; Bolhuis, H. (2016). Haloquadratum, in: Whitman, W.B. (Ed.) Bergey's Manual of Systematics of Archaea and Bacteria. pp. 1-11. https://dx.doi.org/10.1002/9781118960608.gbm01348, more
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van der Meer, M.T.J. (2016). Cruise report 64PE408, NESSC Black Sea, Istanbul-Istanbul, January 28th-February 5th. NIOZ: Texel. 68 pp., more
van der Meer, M.T.J. (2016). Cruise report 64PE410, NIOZ Baltic 2016, Texel-Nynäshamn (Sweden), May 16th- May 28th. NIOZ: Texel. 119 pp., more
van Duyl, F.C. (2016). NIOZ-Saba Bank/Saba Cruise report : Net coral community calcification and hydrodynamics (Saba Bank/Saba) Caribbean Explorer II, 17/24-31 October 2015 Research cruise contributing to Project : Seawater chemistry of CO₂ system and nutrients as drivers of benthic community structure and carbon metabolism of coral reef ecosystems of different trophic status. NIOZ: Texel. 43 pp., more
Vasquez-Cardenas, D. (2016). Bacterial chemoautotrophy in coastal sediments. PhD Thesis. UvA: Amsterdam. ISBN 978-94-91407-33-8. 215 pp. hdl.handle.net/11245/1.531841, more
Carreira , C. (2015). Microscale spatial distributions of microbes in marine intertidal sediments andphotosynthetic microbial mats. PhD Thesis. UvA: Amsterdam. 152 pp. hdl.handle.net/11245/1.471593, more
de Jonge, C. (2015). Sources and sinks of branched tetraether lipids and bacteriohopanepolyols in a major river system (Yenisei River – Kara Sea: Implications for their application as geochemical tracers. PhD Thesis. Universiteit Utrecht (UU): Utrecht. ISBN 978-94-6203-808-0. 254 pp. hdl.handle.net/1874/314974, more
Heinzelmann, S.M. (2015). Metabolism of microbial communities in the environment : A compound-specific stable hydrogen isotope approach. PhD Thesis. Utrecht University: Utrecht. ISBN 9789462039599. 187 pp. hdl.handle.net/1874/328058, more
Kasper, S. (2015). Reconstruction of past changes in ocean salinity - a compound specific stable hydrogen isotope approach. PhD Thesis. Universiteit Utrecht (UU): Utrecht. ISBN 978-94-6203-839-4. 140 pp. hdl.handle.net/1874/313601, more
Mojica, K.D.A. (2015). Viral lysis of marine microbes in relation to vertical stratification. PhD Thesis. Universiteit van Amsterdam: Amsterdam. ISBN 978-94-91407-20-8. 247 pp. hdl.handle.net/11245/1.487499, more
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Mueller, B. (2015). Shedding light on DOC release by benthic primary producers and its consumption by bioeroding sponges. Utrecht Studies in Earth Sciences, 94. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-6266-407-8. 135 pp. http://hdl.handle.net/1874/327650, more
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Zell, C. (2014). Origin and fate of branched tetraether lipids in river drainage systems : Implications for the use of the MBT/CBT proxy as a continental palaeothermometer in marine sedimentary records. PhD Thesis. [S.n.]: [s.l.]. 201 pp. hdl.handle.net/1874/292558, more
Lengger, S.K. (2013). Production and preservation of archaeal glycerol dibiphytanyl glycerol tetraethersas intact polar lipids in marine sediments: Implications for their use in microbial ecology and TEX₈₆ paleothermometry. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-94-6203-385-6. 1-228 pp. hdl.handle.net/1874/277354, more
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Schoon, P.L. (2013). Impact of CO₂ and pH on the distribution and stable carbon isotopic composition of microbial biomarker lipids. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-94-6203-299-6. 185 pp. hdl.handle.net/1874/274222, more
Lopes dos Santos, R.A. (2012). Reconstruction of late Quaternary marine and terrestrial environmental conditions of Northwest Africa and Southeast Australia A multiple organic proxy study using marine sediments. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-94-6203-218-7. 145 pp. hdl.handle.net/1874/258158, more
Rush, D.J. (2012). Ladderanes as tracers for present and past anaerobic ammonium oxidation. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-94-6203-168-5. 133 pp. hdl.handle.net/1874/257091, more
Sheik, A.R. (2012). Viral regulation of nutrient assimilation by algae and prokaryotes. PhD Thesis. Universität Bremen: [s.l.]. 1-137 pp., more
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