| https://vliz.be//nl/imis?module=institute&insid=6702 [2024-08-27] |
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Nederlandse naam: Centrum voor Microbiële Ecologie en Technologie
Overkoepelend instituut: Universiteit Gent; Faculteit Bio-ingenieurswetenschappen; Vakgroep Biotechnologie (UGent)
MOG-kernwoorden (6) : Aquacultuur; Biodiversiteit; Biotechnologie; Ecosysteemfunctioneren; Menselijke gezondheid; Microbiologie
Adres: Coupure Links 653
9000 Gent België
| | Tel.: +32-(0)9-264 59 76
Fax: +32-(0)9-264 62 48
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Type: Wetenschappelijk
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1 Directeur: Hoofd van de onderzoeksgroep/afdeling 2 Mariene onderzoeker: Is werkzaam in deze groep en treedt op als (co)auteur in minstens één mariene publicatie in de laatste 5 jaar. 3 Gespecialiseerd personeel: Levert administratieve of technische ondersteuning aan het zeewetenschappelijk onderzoek.
Abstract: |
Het centrum voor Microbiële Ecologie en Technologie (CMET) werd opgericht in 1978 en is gespecialiseerd in de studie en toepassing van gemengde microbiële culturen en gemeenschappen. CMET richt zich op het optimale beheer van deze microbiële hulpbronnen (Microbial Resource Management, MRM) om de ontwikkeling van nieuwe producten en processen mogelijk te maken die het milieu en de menselijke gezondheid op de meest duurzame manier verbeteren. Meer bepaald past CMET deze aanpak toe op het gebied van toegepaste microbiële ecologie, functionele voeding, medische microbiële ecologie, risicobeoordeling, biomaterialen en nanotechnologie, waterbehandeling, aquacultuur, bio-energie, en bodem en sedimenten.
CMET verricht onderzoek naar de volgende mariene onderwerpen:
- microbiële diversiteit en activiteit in diepe mariene sedimentaire ecosystemen;
- simulatie van de diepzeebiosfeer met behulp van een continue hogedrukbioreactor;
- bioremediatie van mariene ecosystemen.
Het Centrum werkt intensief samen met verschillende buitenlandse instituten (bv. Shanghai JiaoTong University, Universiteit van Milaan, Technische Universiteit van Kreta en de Universiteit van Bologna) en neemt deel aan het UGent Aquaculture R&D consortium. Voorts is de groep betrokken bij verschillende Europese en nationale mariene onderzoeksprojecten. |
Publicaties (205) |
( 170 peer reviewed ) filter
Lambert, S.; Vercauteren, M.; Catarino, A.I.; Li, Y.; Van Landuyt, J.; Boon, N.; Everaert, G.; De Rijcke, M.; Janssen, C.; Asselman, J. (2024). Aerosolization of micro- and nanoplastics via sea spray: Investigating the role of polymer type, size, and concentration, and potential implications for human exposure. Environ. Pollut. 351: 124105. https://dx.doi.org/10.1016/j.envpol.2024.124105
Li, Y.; Schütte, W.; Dekeukeleire, M.; Janssen, C.; Boon, N.; Asselman, J.; Lebeer, S.; Spacova, I.; De Rijcke, M. (2024). The immunostimulatory activity of sea spray aerosols: bacteria and endotoxins activate TLR4, TLR2/6, NF-κB and IRF in human cells. Sci. Total Environ. 927: 171969. https://dx.doi.org/10.1016/j.scitotenv.2024.171969
da Silva Junior, E.C.; Babaahmadifooladia, M.; Folens, K.; dos Reis, A.R.; Guilherme, L.R.G.; van de Wiele, T.; Jacxsens, L.; Du Laing, G. (2023). Content, speciation and in vitro bioaccessibility of trace elements in seaweeds and derived food products. J. food compos. anal. (Print) 118: 105162. https://dx.doi.org/10.1016/j.jfca.2023.105162
Defoirdt, T. (2023). Indole signaling, a promising target to control vibriosis in aquaculture. Aquaculture 574: 739692. https://dx.doi.org/10.1016/j.aquaculture.2023.739692
Fu, S.Z.; Wang, R.; Zhang, J.; Xu, Z.; Yang, X.L.; Yang, Q. (2023). Temporal variability of microbiome in the different plankton hosts revealed distinct environmental persistence of Vibrio parahaemolyticus in shrimp farms. Microbiological Research 275: 127464. https://dx.doi.org/10.1016/j.micres.2023.127464
Kundu, K.; Van Landuyt, J.; Mattelin, V.; Martin, B.; Neyts, M.; Parmentier, K.; Boon, N. (2023). Enhanced removal of warfare agent tri-nitro-toluene by a Methylophaga-dominated microbiome. Mar. Pollut. Bull. 190: 114866. https://dx.doi.org/10.1016/j.marpolbul.2023.114866
Lobanov, V.; De Vrieze, J.; Joyce, A. (2023). Simultaneous biomethane production and nutrient remineralization from aquaculture solids. Aquacult. Eng. 101: 102328. https://dx.doi.org/10.1016/j.aquaeng.2023.102328
Ma, L.; Roman, M.; Alhadidi, A.; Jia, M.; Martini, F.; Xue, Y.; Verliefde, A.; Gutierrez, L.; Cornelissen, E. (2023). Fate of organic micropollutants during brackish water desalination for drinking water production in decentralized capacitive electrodialysis. Wat. Res. 245: 120625. https://dx.doi.org/10.1016/j.watres.2023.120625
Zhang, S.; Yang, Q.; Eggermont, M.; Defoirdt, T. (2023). Quorum-sensing interference in vibrios. Reviews in Aquaculture 15(4): 1452-1466. https://dx.doi.org/10.1111/raq.12787
Zhang, S.; Van Haesebroeck, J.; Yang, Q.; Defoirdt, T. (2023). Indole-3-acetic acid increases the survival of brine shrimp challenged with vibrios belonging to the Harveyi clade. J. Fish Dis. 46(5): 477-486. https://dx.doi.org/10.1111/jfd.13759
Zhang, S.; Yang, Q.; Defoirdt, T. (2023). Halogenated indoles decrease the virulence of Vibrio campbellii in a gnotobiotic brine shrimp model. Microbiology Spectrum 10(5): 1-12. https://dx.doi.org/10.1128/spectrum.02689-22
Zhang, X.; Arbour, T.; Zhang, D.; Wei, S.; Rabaey, K. (2023). Microbial electrosynthesis of acetate from CO2 under hypersaline conditions. Environmental Science and Ecotechnology 13: 100211. https://dx.doi.org/10.1016/j.ese.2022.100211
Babaahmadifooladia, M.; da Silva Junior, E.C.; van de Wiele, T.; Du Laing, G.; Jacxsens, L. (2022). Probabilistic chronic dietary exposure assessment adjusted for bioaccessible fraction to metals by consumption of seaweed and derived foods. Food Chemistry 395: 133588. https://dx.doi.org/10.1016/j.foodchem.2022.133588
Ceron-Chafla, P.; García-Timermans, C.; de Vrieze, J.; Ganigué, R.; Boon, N.; Rabaey, K.; van Lier, J.B.; Lindeboom, R.E.F. (2022). Pre-incubation conditions determine the fermentation pattern and microbial community structure in fermenters at mild hydrostatic pressure. Biotechnol. Bioeng. 119(7): 1792-1807. https://dx.doi.org/10.1002/bit.28085
Fu, S.; Wang, Q.; Wang, R.; Zhang, Y.; Lan, R.; He, F.; Yang, Q. (2022). Horizontal transfer of antibiotic resistance genes within the bacterial communities in aquacultural environment. Sci. Total Environ. 820: 153286. https://dx.doi.org/10.1016/j.scitotenv.2022.153286
Gan, L.; Zheng, J.; Xu, W.-H.; Lin, J.; Liu, J.; Zhang, Y.; Wu, Z.; Lv, Z.; Jia, Y.; Guo, Q.; Chen, S.; Liu, C.; Defoirdt, T.; Qin, Q.; Liu, Y. (2022). Deciphering the virulent Vibrio harveyi causing spoilage in muscle of aquatic crustacean Litopenaeus vannamei. NPG Scientific Reports 12(1): 16296. https://dx.doi.org/10.1038/s41598-022-20565-1
Islam, S.S.; Zhang, S.; Eggermont, M.; Bruto, M.; Le Roux, F.; Defoirdt, T. (2022). The impact of the multichannel quorum sensing systems of Vibrio tasmaniensis and Vibrio crassostreae on virulence towards blue mussel (Mytilus edulis) larvae. Aquaculture 547: 737414. https://dx.doi.org/10.1016/j.aquaculture.2021.737414
Torun, F.; Hostins, B.; De Schryver, P.; Boon, N.; De Vrieze, J. (2022). Molybdate effectively controls sulphide production in a shrimp pond model. Environ. Res. 203: 111797. https://dx.doi.org/10.1016/j.envres.2021.111797
Van Landuyt, J.; Kundu, K.; Van Haelst, S.; Neyts, M.; Parmentier, K.; De Rijcke, M.; Boon, N. (2022). 80 years later: Marine sediments still influenced by an old war ship. Front. Mar. Sci. 9: 1017136. https://dx.doi.org/10.3389/fmars.2022.1017136
Xiong, C.; Calatayud, M.; van de Wiele, T.; Francesconi, K. (2022). Gut microbiota metabolize arsenolipids in a donor dependent way. Ecotoxicol. Environ. Saf. 239: 113662. https://dx.doi.org/10.1016/j.ecoenv.2022.113662
Yang, Q.; Wang, Q.; Wu, J.; Zhang, Y.; Wei, D.; Qu, B.; Liu, Y.; Fu, S. (2022). Distinct dynamics of Vibrio parahaemolyticus populations in two farming models. J. Appl. Microbiol. 133(3): 1146-1155. https://dx.doi.org/10.1111/jam.15217
Zhang, S.; Yang, Q.; Fu, S.; Janssen, C.R.; Eggermont, M.; Defoirdt, T. (2022). Indole decreases the virulence of the bivalve model pathogens Vibrio tasmaniensis LGP32 and Vibrio crassostreae J2-9. NPG Scientific Reports 12(1): 5749. https://dx.doi.org/10.1038/s41598-022-09799-1
Zhang, S.; Yang, Q.; Defoirdt, T. (2022). Indole decreases the virulence of pathogenic vibrios belonging to the Harveyi clade. J. Appl. Microbiol. 132(1): 167-176. https://dx.doi.org/10.1111/jam.15227
Zhang, S.; Yang, Q.; Defoirdt, T. (2022). Indole analogues decreasing the virulence of Vibrio campbellii towards brine shrimp larvae. Microbial biotechnology 15(12): 2917-2928. https://dx.doi.org/10.1111/1751-7915.14160
Dumolin, C.; Peeters, C.; De Canck, E.; Boon, N.; Vandamme, P. (2021). Network analysis based on unique spectral features enables an efficient selection of genomically diverse operational isolation units. Microorganisms 9(2): 416. https://dx.doi.org/10.3390/microorganisms9020416
Fu, S.; Ni, P.; Yang, Q.; Hu, H.; Wang, Q.; Ye, S.; Liu, Y. (2021). Delineating the key virulence factors and intraspecies divergence of Vibrio harveyi via whole-genome sequencing. Can. J. Microbiol. 67(3): 231-248. https://hdl.handle.net/10.1139/cjm-2020-0079
Fu, S.; Wang, Q.; Zhang, Y.; Yang, Q.; Hao, J.; Liu, Y.; Pang, B. (2021). Dynamics and microevolution of Vibrio parahaemolyticus populations in shellfish farms. mSystems 6(1): e01161-20. https://hdl.handle.net/10.1128/mSystems.01161-20
Fu, S.; Yang, Q.; Wang, Q.; Pang, B.; Lan, R.; Wei, D.; Qu, B.; Liu, Y. (2021). Continuous genomic surveillance monitored the in vivo evolutionary trajectories of Vibrio parahaemolyticus and identified a new virulent genotype. mSystems 6(1): e01254-20. https://dx.doi.org/10.1128/msystems.01254-20
Göing, S.; Gasperotti, A.F.; Yang, Q.; Defoirdt, T.; Jung, K. (2021). Insights into a pyruvate sensing and uptake system in Vibrio campbellii and its importance for virulence. J. Bacteriol. 203(20): e00296-21. https://dx.doi.org/10.1128/JB.00296-21
Heyse, J.; Props, R.; Kongnuan, P.; De Schryver, P.; Rombaut, G.; Defoirdt, T.; Boon, N. (2021). Rearing water microbiomes in white leg shrimp (Litopenaeus vannamei) larviculture assemble stochastically and are influenced by the microbiomes of live feed products. Environ. Microbiol. 23(1): 281-298. https://hdl.handle.net/10.1111/1462-2920.15310
Heyse, J.; Schattenberg, F.; Rubbens, P.; Müller, S.; Waegeman, W.; Boon, N.; Props, R. (2021). Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting. mSystems 6(5): e00551-21. https://dx.doi.org/10.1128/msystems.00551-21
Kaur-Kahlon, G.; Kumar, B.K.; Ruwandeepika, H.A.D.; Defoirdt, T.; Karunasagar, I. (2021). Quorum sensing regulation of virulence gene expression in Vibrio harveyi during its interaction with marine diatom Skeletonema marinoi. Journal of Pure and Applied Microbiology 15(4): 2507-2519. https://dx.doi.org/10.22207/JPAM.15.4.78
Rubbens, P.; Props, R.; Kerckhof, F.-M.; Boon, N.; Waegeman, W. (2021). PhenoGMM: Gaussian mixture modeling of cytometry data quantifies changes inmicrobial community structure. mSphere 6(1): e00530-20. https://dx.doi.org/10.1128/msphere.00530-20
Rubbens, P.; Props, R.; Kerckhof, F.-M.; Boon, N.; Waegeman, W. (2021). Cytometric fingerprints of gut microbiota predict Crohn’s disease state. ISME J. 15(1): 354-358. https://dx.doi.org/10.1038/s41396-020-00762-4
Rubbens, P.; Props, R. (2021). Computational analysis of microbial flow cytometry data. mSystems 6(1): e00895-20. https://dx.doi.org/10.1128/msystems.00895-20
Vanwijnsberghe, S.; Peeters, C.; De Ridder, E.; Dumolin, C.; Wieme, A.D.; Boon, N.; Vandamme, P. (2021). Genomic aromatic compound degradation potential of novel Paraburkholderia species: Paraburkholderia domus sp. nov., Paraburkholderia haematera sp. nov. and Paraburkholderia nemoris sp. nov. International Journal of Molecular Sciences 22(13): 7003. https://dx.doi.org/10.3390/ijms22137003
Wang, Q.; Zhang, Y.; Yang, Q.; Fu, S.; Qu, B.; Defoirdt, T. (2021). One health pathogen surveillance demonstrated the dissemination of gut pathogens within the two coastal regions associated with intensive farming. Gut Pathogens 13(1): 47. https://dx.doi.org/10.1186/s13099-021-00442-4
Yang, Q.; Fu, S.; Zou, P.; Hao, J.; Wei, D.; Xie, G.; Huang, J. (2021). Coordination of primary metabolism and virulence factors expression mediates the virulence of Vibrio parahaemolyticus towards cultured shrimp (Penaeus vannamei). J. Appl. Microbiol. 131(1): 50-67. https://hdl.handle.net/10.1111/jam.14922
Yang, Q.; Zou, P.; Cao, Z.; Wang, Q.; Fu, S.; Xie, G.; Huang, J. (2021). QseC inhibition as a novel antivirulence strategy for the prevention of Acute Hepatopancreatic Necrosis Disease (AHPND)-causing Vibrio parahaemolyticus. Frontiers in Cellular and Infection Microbiology 10: 594652. https://hdl.handle.net/10.3389/fcimb.2020.594652
Callewaert, C.; Helffer, K.R.; Lebaron, P. (2020). Skin microbiome and its interplay with the environment. American Journal of Clinical Dermatology 21(S1): 4-11. https://hdl.handle.net/10.1007/s40257-020-00551-x
Dumolin, C.; Peeters, C.; Ehsani, E.; Tahon, G.; De Canck, E.; Cnockaert, M.; Boon, N.; Vandamme, P. (2020). Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production. Int. J. Syst. Evol. Microbiol. 70(1): 530-536. https://dx.doi.org/10.1099/ijsem.0.003786
Fu, S.; Wei, D.; Yang, Q.; Xie, G.; Pang, B.; Wang, Y.; Lan, R.; Wang, Q.; Dong, X.; Zhang, X.; Huang, J.; Feng, J.; Liu, Y. (2020). Horizontal plasmid transfer promotes the dissemination of Asian acute hepatopancreatic necrosis disease and provides a novel mechanism for genetic exchange and environmental adaptation. mSystems 5(2): e00799-19. https://hdl.handle.net/10.1128/mSystems.00799-19
García-Timermans, C.; Rubbens, P.; Heyse, J.; Kerckhof, F.-M.; Props, R.; Skirtach, A.G.; Waegeman, W.; Boon, N. (2020). Discriminating bacterial phenotypes at the population and single‐cell level: a comparison of flow cytometry and Raman spectroscopy fingerprinting. Cytometry A 97(7): 713-726. https://dx.doi.org/10.1002/cyto.a.23952
Le, D.; Nguyen, P.; Nguyen, D.; Dierckens, K.; Boon, N.; Lacoere, T.; Kerckhof, F.-M.; De Vrieze, J.; Vadstein, O.; Bossier, P. (2020). Gut microbiota of migrating wild rabbit fish (Siganus guttatus) larvae have low spatial and temporal variability. Microb. Ecol. 79: 539-551. https://dx.doi.org/10.1007/s00248-019-01436-1
Van Landuyt, J.; Cimmino, L.; Dumolin, C.; Chatzigiannidou, I.; Taveirne, F.; Mattelin, V.; Zhang, Y.; Vandamme, P.; Scoma, A.; Williamson, A.; Boon, N. (2020). Microbial enrichment, functional characterization and isolation from a cold seep yield piezotolerant obligate hydrocarbon degraders. FEMS Microbiol. Ecol. 96(9): fiaa097. https://dx.doi.org/10.1093/femsec/fiaa097
Wang, Q.; Fu, S.; Yang, Q.; Hao, J.; Zhou, C.; Liu, Y. (2020). The impact of water intrusion on pathogenic Vibrio species to inland brackish waters of China. International Journal of Environmental Research and Public Health 17(18): 6781. https://hdl.handle.net/10.3390/ijerph17186781
Yang, S.; Lv, Y.; Liu, X.; Wang, Y.; Fan, Q.; Yang, Z.; Boon, N.; Wang, F.; Xiao, X.; Zhang, Y. (2020). Genomic and enzymatic evidence of acetogenesis by anaerobic methanotrophic archaea. Nature Comm. 11(1): 11 pp. https://dx.doi.org/10.1038/s41467-020-17860-8
Zou, P.; Yang, Q.; Wang, H.; Xie, G.; Cao, Z.; Chen, X.; Gao, W.; Huang, J. (2020). In vitro disinfection efficacy and clinical protective effects of common disinfectants against acute hepatopancreatic necrosis disease (AHPND)-causing Vibrio isolates in Pacific white shrimp Penaeus vannamei. J. Microbiol. 58(8): 675-686. https://hdl.handle.net/10.1007/s12275-020-9537-1
Czechowska, Kamila; Lannigan, Joanne; Wang, Lili; Arcidiacono, Judith; Ashhurst, Thomas M.; Barnard, Ruth M.; Bauer, Steven; Bispo, Cláudia; Bonilla, Diana L.; Brinkman, Ryan R.; Cabanski, Maciej; Chang, Hyun‐Dong; Chakrabarti, Lina; Chojnowski, Grace; Cotleur, Bunny; Degheidy, Heba; Dela Cruz, Gelo V.; Eck, Steven; Elliott, John; Errington, Rachel; Filby, Andy; Gagnon, Dominic; Gardner, Rui; Green, Cherie; Gregory, Michael; Groves, Christopher J.; Hall, Christopher; Hammes, Frederik; Hedrick, Michael; Hoffman, Robert; Icha, Jaroslav; Ivaska, Johanna; Jenner, Dominic C.; Jones, Derek; Kerckhof, Frederiek‐Maarten; Kukat, Christian; Lanham, David; Leavesley, Silas; Lee, Michael; Lin‐Gibson, Sheng; Litwin, Virginia; Liu, Yanli; Molloy, Jenny; Moore, Jonni S.; Müller, Susann; Nedbal, Jakub; Niesner, Raluca; Nitta, Nao; Ohlsson‐Wilhelm, Betsy; Paul, Nicole E.; Perfetto, Stephen; Portat, Ziv; Props, Ruben; Radtke, Stefan; Rayanki, Radhika; Rieger, Aja; Rogers, Samson; Rubbens, Peter; Salomon, Robert; Schiemann, Matthias; Sharpe, John; Sonder, Soren Ulrik; Stewart, Jennifer J.; Sun, Yongliang; Ulrich, Henning; Van Isterdael, Gert; Vitaliti, Alessandra; Vreden, Caryn; Weber, Michael; Zimmermann, Jakob; Vacca, Giacomo; Wallace, Paul; Tárnok, Attila (2019). Cyt‐Geist: current and future challenges in cytometry: reports of the CYTO 2018 conference workshops. Cytometry A 95(6): 598-644. https://dx.doi.org/10.1002/cyto.a.23777
Defoirdt, T. (2019). Amino acid–derived quorum sensing molecules controlling the virulence of vibrios (and beyond). PLoS Pathog. 15(7): e1007815. https://dx.doi.org/10.1371/journal.ppat.1007815
Eggermont, M.; Cornillie, P.; Nevejan, N.; Bossier, P.; Dierick, M.; Adriaens, D.; Sorgeloos, P.; Defoirdt, T.; Declercq, A.M. (2019). Hemolymph extraction sites and 3d-visualization of the cardiovascular system and related structures of the blue mussel (Mytilus edulis). Isj-Invertebrate Survival Journal 16: 202-202
Ehsani, E.; Dumolin, C.; Arends, J.B.A.; Kerckhof, F.-M.; Hu, X.; Vandamme, P.; Boon, N. (2019). Enriched hydrogen-oxidizing microbiomes show a high diversity of co-existing hydrogen-oxidizing bacteria. Appl. Microbiol. Biotechnol. 103(19): 8241-8253. https://dx.doi.org/10.1007/s00253-019-10082-z
Fu, S.; Hao, J.; Yang, Q.; Lan, R.; Wang, Y.; Ye, S.; Liu, Y.; Li, R. (2019). Long-distance transmission of pathogenic Vibrio species by migratory waterbirds: a potential threat to the public health. NPG Scientific Reports 9: 16303. https://dx.doi.org/10.1038/s41598-019-52791-5
Heyse, J.; Buysschaert, B.; Props, R.; Rubbens, P.; Skirtach, A.G.; Waegeman, W.; Boon, N. (2019). Coculturing bacteria leads to reduced phenotypic heterogeneities. Appl. Environ. Microbiol. 85(8): e02814-18. https://dx.doi.org/10.1128/aem.02814-18
Muthukrishnan, S.; Defoirdt, T.; Ina-Salwany, M.Y.; Yusoff, F.M.; Shariff, M.; Ismail, S.I.; Natrah, I. (2019). Vibrio parahaemolyticus and Vibrio harveyi causing Acute Hepatopancreatic Necrosis Disease (AHPND) in Penaeus vannamei (Boone, 1931) isolated from Malaysian shrimp ponds. Aquaculture 511: 734227. https://dx.doi.org/10.1016/j.aquaculture.2019.734227
Nguyen, B.; Rubbens, P.; Kerckhof, F.-M.; Boon, N.; De Baets, B.; Waegeman, W. (2019). Learning single‐cell distances from cytometry data. Cytometry A 95(7): 782-791. https://dx.doi.org/10.1002/cyto.a.23792
Noor, N.M.; Defoirdt, T.; Alipiah, N.; Karim, M.; Daud, H.; Natrah, I. (2019). Quorum sensing is required for full virulence of Vibrio campbellii towards tiger grouper (Epinephelus fuscoguttatus) larvae. J. Fish Dis. 42(4): 489-495. https://dx.doi.org/10.1111/jfd.12946
Rubbens, P.; Schmidt, M.L.; Props, R.; Biddanda, B.A.; Boon, N.; Waegeman, W.; Denef, V.J. (2019). Randomized Lasso links microbial taxa with aquatic functional groups inferred from flow cytometry. mSystems 4(5): e00093-19. https://dx.doi.org/10.1128/msystems.00093-19
Scoma, A.; Heyer, R.; Rifai, R.; Dandyk, C.; Marshall, I.; Kerckhof, F.-M.; Marietou, A.; Boshker, H.T.S.; Meysman, F.J.R.; Malmos, K.G.; Vosegaard, T.; Vermeir, P.; Banat, I.M.; Benndorf, D.; Boon, N. (2019). Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities. ISME J. 13(4): 1004-1018. https://dx.doi.org/10.1038/s41396-018-0324-5
Calatayud, M.; Xiong, C.; Du Laing, G.; Raber, G.; Francesconi, K.; Van de Wiele, T. (2018). Salivary and gut microbiomes play a significant role in in vitro oral bioaccessibility, biotransformation, and intestinal absorption of arsenic from food. Environ. Sci. Technol. 52(24): 14422-14435. https://dx.doi.org/10.1021/acs.est.8b04457
Daghio, M.; Vaiopoulou, E.; Aulenta, F.; Sherry, A.; Head, I.; Franzetti, A.; Rabaey, K. (2018). Anode potential selection for sulfide removal in contaminated marine sediments. J. Hazard. Mater. 360: 498-503. https://dx.doi.org/10.1016/j.jhazmat.2018.08.016
De Bodt, J.; Defoirdt, T. (2018). Impact of the organic load on the efficacy of chlorine disinfection against acute hepatopancreatic necrosis disease-causing Vibrio parahaemolyticus. J. Fish Dis. 41(10): 1609-1612. https://dx.doi.org/10.1111/jfd.12866
Defoirdt, T.; Anh, N.T.M.; De Schryver, P. (2018). Virulence-inhibitory activity of the degradation product 3-hydroxybutyrate explains the protective effect of poly-β-hydroxybutyrate against the major aquaculture pathogen Vibrio campbellii. NPG Scientific Reports 8: 7245. https://dx.doi.org/10.1038/s41598-018-25385-w
Dominguez-Benetton, X.; Varia, J.C.; Pozo, G.; Modin, O.; Ter Heijne, A.; Fransaer, J.; Rabaey, K. (2018). Metal recovery by microbial electro-metallurgy. Progress in Materials Science 94: 435-461. https://dx.doi.org/10.1016/j.pmatsci.2018.01.007
García-Timermans, C.; Rubbens, P.; Kerckhof, F.-M.; Buysschaert, B.; Khalenkow, D.; Waegeman, W.; Skirtach, A.G.; Boon, N. (2018). Label-free Raman characterization of bacteria calls for standardized procedures. J. microbiol. methods 151: 69-75. https://dx.doi.org/10.1016/j.mimet.2018.05.027
Kuuliala, L.; Al Hage, Y.; Ioannidis, A.-G.; Sader, M.; Kerckhof, F.-M.; Vanderroost, M.; Boon, N.; De Baets, B.; De Meulenaer, B.; Ragaert, P.; Devlieghere, F. (2018). Microbiological, chemical and sensory spoilage analysis of raw Atlantic cod (Gadus morhua) stored under modified atmospheres. Food Microbiol. 70: 232-244. https://dx.doi.org/10.1016/j.fm.2017.10.011
Li, X.; Dierckens, K.; Bossier, P.; Defoirdt, T. (2018). The impact of quorum sensing on the virulence of Vibrio anguillarum towards gnotobiotic sea bass (Dicentrarchus labrax) larvae. Aquac. Res. 49(11): 3686-3689. https://dx.doi.org/10.1111/are.13821
Props, R.; Rubbens, P.; Besmer, M.; Buysschaert, B.; Sigrist, J.; Weilenmann, H.; Waegeman, W.; Boon, N.; Hammes, F. (2018). Detection of microbial disturbances in a drinking water microbial community through continuous acquisition and advanced analysis of flow cytometry data. Wat. Res. 145: 73-82. https://dx.doi.org/10.1016/j.watres.2018.08.013
Cheyns, K.; Waegeneers, N.; Van de Wiele, T.; Ruttens, A. (2017). Arsenic release from foodstuffs upon food preparation. J. Agric. Food Chem. 65(11): 2443-2453. https://dx.doi.org/10.1021/acs.jafc.6b05721
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Dang, T.V.C.; Nguyen, V.H.; Dierckens, K.; Defoirdt, T.; Boon, N.; Sorgeloos, P.; Bossier, P. (2009). Novel approach of using homoserine lactone-degrading and poly-beta-hydroxybutyrate-accumulating bacteria to protect Artemia from the pathogenic effects of Vibrio harveyi. Aquaculture 291(1-2): 23-30. dx.doi.org/10.1016/j.aquaculture.2009.03.009
De Schryver, P.; Verstraete, W. (2009). Nitrogen removal from aquaculture pond water by heterotrophic nitrogen assimilation in lab-scale sequencing batch reactors. Bioresour. Technol. 100(3): 1162-1167. dx.doi.org/10.1016/j.biortech.2008.08.043
Dierckens, K.; Rekecki, A.; Laureau, S.; Sorgeloos, P.; Boon, N.; Van Den Broeck, W.; Bossier, P. (2009). Development of a bacterial challenge test for gnotobiotic sea bass (Dicentrarchus labrax) larvae. Environ. Microbiol. 11(2): 526-533. dx.doi.org/10.1111/j.1462-2920.2008.01794.x
Erguder, T.H.; Boon, N.; Wittebolle, L.; Marzorati, M.; Verstraete, W. (2009). Environmental factors shaping the ecological niches of ammonia-oxidizing archaea. FEMS Microbiol. Rev. 33(5): 855-869. http://dx.doi.org/10.1111/j.1574-6976.2009.00179.x
Maignien, L.; Boon, N.; RV James Cook JC10 Shipboard (2009). Environmental constrains on microbial methane oxidation activity and community structure in Gulf of Cadiz mud volcanoes. Geochim. Cosmochim. Acta 73(13): A819-A819
Qi, Z.; Dierckens, K.; Defoirdt, T.; Sorgeloos, P.; Boon, N.; Bao, Z.; Bossier, P. (2009). Effects of feeding regime and probionts on the diverting microbial communities in rotifer Brachionus culture. Aquacult. Int. 17(4): 303-315. dx.doi.org/10.1007/s10499-008-9202-x
Qi, Z.; Dierckens, K.; Defoirdt, T.; Sorgeloos, P.; Boon, N.; Bao, Z.; Bossier, P. (2009). Analysis of the evolution of microbial communities associated with different cultures of rotifer strains belonging to different cryptic species of the Brachionus plicatilis species. Aquaculture 292(1-2): 23-29. dx.doi.org/10.1016/j.aquaculture.2009.03.030
Qi, Z.Z.; Zhang, X.H.; Boon, N.; Bossier, P. (2009). Probiotics in aquaculture of China - Current state, problems and prospect. Aquaculture 290(1-2): 15-21. dx.doi.org/10.1016/j.aquaculture.2009.02.012
Rekecki, A.; Dierckens, K.; Laureau, S.; Boon, N.; Bossier, P.; Van Den Broeck, W. (2009). Effect of germ-free rearing environment on gut development of larval sea bass (Dicentrarchus labrax L.). Aquaculture 293(1-2): 8-15. dx.doi.org/10.1016/j.aquaculture.2009.04.001
Sung, Y.; Dhaene, T.; Defoirdt, T.; Boon, N.; MacRae, T.; Sorgeloos, P.; Bossier, P. (2009). Ingestion of bacteria overproducing DnaK attenuates Vibrio infection of Artemia franciscana larvae. Cell Stress Chap. 14(6): 603-609. https://dx.doi.org/10.1007/s12192-009-0112-2
Wehrmann, L.M.; Templer, S.P.; Maignien, L.; Bernasconi, S.M.; Brunner, B.; Ferdelman, T.G. (2009). The imprint of methane seepage on geochemical processes in cold-water coral mounds on Pen Duick Escarpment, Gulf of Cadiz. Geochim. Cosmochim. Acta 73(13): A1424-A1424
Zhang, Y.; Maignien, L.; Verstraete, W.; Henriet, J.-P.; Boon, N. (2009). Simulation of the deep-sea biosphere by a continuous high-pressure bioreactor. Geophys. Res. Abstr. 11(1065)
Brackman, G.; Defoirdt, T.; Miyamoto, C.; Bossier, P.; Van Calenbergh, S.; Nelis, H.J.; Coenye, T. (2008). Cinnamaldehyde and cinnamaldehyde derivatives reduce virulence in Vibrio spp. by decreasing the DNA-binding activity of the quorum sensing response regulator LuxR. BMC Microbiol. 8. dx.doi.org/10.1186/1471-2180-8-149
De Schryver, P.; Crab, R.; Defoirdt, T.; Boon, N.; Verstraete, W. (2008). The basics of bio-flocs technology: the added value for aquaculture. Aquaculture 277(3-4): 125-137. dx.doi.org/10.1016/j.aquaculture.2008.02.019
Defoirdt, T.; Boon, N.; Sorgeloos, P.; Verstraete, W.; Bossier, P. (2008). Quorum sensing and quorum quenching in Vibrio harveyi: lessons learned from in vivo work. ISME J. 2(1): 19-26. dx.doi.org/10.1038/ismej.2007.92
Defoirdt, T.; Verstraete, W.; Bossier, P. (2008). Luminescence, virulence and quorum sensing signal production by pathogenic Vibrio campbellii and Vibrio harveyi isolates. J. Appl. Microbiol. 104(5): 1480-1487. dx.doi.org/10.1111/j.1365-2672.2007.03672.x
Crab, R.; Avnimelech, Y.; Defoirdt, T.; Bossier, P.; Verstraete, W. (2007). Nitrogen removal techniques in aquaculture for a sustainable production. Aquaculture 270(1-4): 1-14. dx.doi.org/10.1016/j.aquaculture.2007.05.006
Maignien, L.; Depreiter, D.; Foubert, A.; Boon, N.; Verstraete, W.; Henriet, J.-P. (2007). Biogeochemistry of carbonate mounds from the Pen Duick escarpment in the Gulf of Cadiz. Geophys. Res. Abstr. 9: 08287
Defoirdt, T.; Halet, D.; Sorgeloos, P.; Bossier, P.; Verstraete, W. (2006). Short-chain fatty acids protect gnotobiotic Artemia franciscana from pathogenic Vibrio campbellii. Aquaculture 261(2): 804-808. dx.doi.org/10.1016/j.aquaculture.2006.06.038
Henriet, J.P.; Hamoumi, N.; Ivanov, M.; Pinheiro, L.; Suzyumov, A.; Swennen, R.; Blinova, V.; Bouimetarhan, I.; De Boever, E.; Depreiter, D.; Foubert, A.; Kozlova, E.; Maignien, L.; Poort, J.; Van Rensbergen, P.; Van Rooij, D. (2006). The mud volcano province on the Atlantic Moroccan margin: Towards a natural laboratory for joint European-Maghreb research, in: CIESM Fluid seepages - mud volcanism in the Mediterranean and adjacent domains, Bologna, 19-22 October 2005. CIESM Workshop Monographs, 29: pp. 21-26
Maignien, L.; Foubert, A.; Depreiter, D.; Boon, N.; Blamart, D.; Verstraete, W.; Henriet, J.-P. (2006). Biogeochemical evidence for anoxic oxidation of methane occurrences in the juvenile carbonate mounds from the Gulf of Cadiz. Geophys. Res. Abstr. 8: 06630
Marques, A.; Thanh, T.H.; Verstraete, W.; Dhont, J.; Sorgeloos, P.; Bossier, P. (2006). Use of selected bacteria and yeast to protect gnotobiotic Artemia against different pathogens. J. Exp. Mar. Biol. Ecol. 334(1): 20-30. dx.doi.org/10.1016/j.jembe.2006.01.007
Seurinck, S.; Verdievel, M.; Verstraete, W.; Siciliano, S.D. (2006). Identification of human fecal pollution sources in a coastal area: a case study at Oostende (Belgium). Journal of Water and Health 4(2): 167-175. https://dx.doi.org/10.2166/wh.2006.0014
Defoirdt, T.; Boon, N.; Bossier, P.; Verstraete, W. (2004). Disruption of bacterial quorum sensing: an unexplored strategy to fight infections in aquaculture. Aquaculture 240(1-4): 69-88. dx.doi.org/10.1016/j.aquaculture.2004.06.031
Rombaut, G.; Grommen, R.; Zizhong, Q.; Vanhoof, V.; Suantika, G.; Dhert, P.; Sorgeloos, P.; Verstraete, W. (2003). Improved performance of an intensive rotifer culture system by using a nitrifying inoculum (ABIL). Aquac. Res. 34(2): 165-174. dx.doi.org/10.1046/j.1365-2109.2003.00798.x
Dhert, P.; Rombaut, G.; Suantika, G.; Sorgeloos, P. (2001). Advancement of rotifer culture and manipulation techniques in Europe. Aquaculture 200(1-2): 129-146. dx.doi.org/10.1016/S0044-8486(01)00697-4
Rombaut, G.; Suantika, G.; Boon, N.; Maertens, S.; Dhert, P.; Top, E.; Sorgeloos, P.; Verstraete, W. (2001). Monitoring of the evolving diversity of the microbial community present in rotifer cultures. Aquaculture 198(3-4): 237-252. dx.doi.org/10.1016/S0044-8486(01)00594-4
Suantika, G.; Dhert, P.; Rombaut, G.; Vandenberghe, J.; De Wolf, T.; Sorgeloos, P. (2001). The use of ozone in a high density recirculation system for rotifers. Aquaculture 201(1-2): 35-49. dx.doi.org/10.1016/S0044-8486(01)00532-4
- Lambert, S.; Vercauteren, M.; Catarino, A.I.; Li, Y.; Van Landuyt, J.; Boon, N.; Everaert, G.; De Rijcke, M.; Janssen, C.; Asselman, J. (2024). Transfer of micro- and nanoplastics via sea spray aerosols and estimate of human exposure, in: SETAC Europe 34th Annual Meeting, 5–9 May 2024, Seville, Spain: Abstract Book. pp. 492
- Li, Y.; Schütte, W.; Van Beeck, W.; Dekeukeleire, M.; Janssen, C.; Boon, N.; Asselman, J.; Lebeer, S.; Spacova, I.; De Rijcke, M. (2024). Immune receptor- and transcription factor-stimulatory effects of bacteria and endotoxin in sea spray aerosols on human cells, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, 6 March 2024, Oostende. VLIZ Special Publication, 91: pp. 33
- Martin, B.; Boon, N.; De Troch, M. (2024). Copepod guts, a new world in marine sediments?, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, 6 March 2024, Oostende. VLIZ Special Publication, 91: pp. 17
- Schütte, W.; Van Landuyt, J.; Strehse, J.; Bünning, T.H.; Van Haelst, S.; Parmentier, K.; Maser, E.; Boon, N.; De Rijcke, M. (2024). Bacterial clues of shipwreck TNT pollution in the North Sea, in: SETAC Europe 34th Annual Meeting, 5–9 May 2024, Seville, Spain: Abstract Book. pp. 766
- De Rijcke, M.; Van Landuyt, J.; Kundu, K.; Van Haelst, S.; Neyts, M.; Parmentier, K.; Boon, N. (2023). Microbial community responses to a wartime wreck: the John Mahn case study, in: North Sea Wrecks Project, Steering Group Meeting 13, Bremerhaven, 18 April 2023.
- Boes, E.; Van Landuyt, J.; Kundu, K.; Visser, J.; Mattelin, V.; Missiaen, T. (2022). Shallow gas at the Paardenmarkt WWI munition dumpsite, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 2 March 2022. VLIZ Special Publication, 88: pp. 37
- Lambert, S.; Vercauteren, M.; Van Landuyt, J.; Liu, Z.; Diopere, E.; Boon, N.; Janssen, C.R.; Asselman, J. (2022). Do we inhale aerosolized microplastics on the beach?, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 2 March 2022. VLIZ Special Publication, 88: pp. 59
- Mattelin, V. (2022). Integration of taxonomic and phenotypic fingerprints of marine plastic degrading communities: Extended abstract: Brilliant Marine Research Idea 2021. Ghent University: Gent. 3 pp.
- Mattelin, V.; Van Landuyt, J.; Boon, N. (2022). Integration of taxonomic and phenotypic fingerprints of marine plastic degrading communities, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 2 March 2022. VLIZ Special Publication, 88: pp. 6
- Rombouts, A. (2022). The role of Alcanivorax in marine plastic biodegradation. MSc Thesis. Universiteit Gent: Gent. 98 pp.
- Rombouts, A.; Van Landuyt, J.; Mattelin, V.; Boon, N. (2022). Marine plastic biodegradation: what is Alcanivorax’s role?, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 2 March 2022. VLIZ Special Publication, 88: pp. 25
- Herweyers, R.; Van Landuyt, J.; Mattelin, V.; Martin, B.; Laduron, F.; Geukens, K.; Kundu, K.; Boon, N. (2021). Can we track the possible influence of chemical warfare agents on microbial community in the marine environment?, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 3 March 2021. VLIZ Special Publication, 85: pp. 14-15
- Herweyers, R.; Van Landuyt, J.; Mattelin, V.; Martin, B.; Laduron, F.; Geukens, K.; Kundu, K.; Boon, N. (2021). Can we track the possible influence of chemical warfare agents on microbial community in the marine environment?, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Oostende, Belgium, 3 March 2021. VLIZ Special Publication, 87: pp. 67-68
- Heyse, J.; Props, R.; Kongnuan, P.; De Schryver, P.; Rombaut, G.; Defoirdt, T.; Boon, N. (2021). Microbiomes of live feed products have an important contribution to the rearing water microbiomes in Litopenaeus vannamei larviculture, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 3 March 2021. VLIZ Special Publication, 85: pp. 69
- Martin, B. (2021). Microbial monitoring and degradation of the explosive TNT at a WW1 munition dumpsite before the Belgian coast. Ir Thesis. Ghent University: Gent. 74 pp.
- Martin, B.; Van Landuyt, J.; Mattelin, V.; Herweyers, R.; Neyts, M.; Parmentier, K.; Kundu, K.; Boon, N. (2021). Spying bacteria for dumped World War I munition at the coast of Knokke-Heist, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Oostende, Belgium, 3 March 2021. VLIZ Special Publication, 87: pp. 83-84
- Pluym, T. (2021). Probing microbial activity: One cell at a time. Ir Thesis. Ghent University: Gent. 102 pp.
- Pluym, T.; Van Landuyt, J.; Boon, N.; Props, R. (2021). Probing the single-cell activity of Alcanivorax venustensis during deep-sea oil degradation, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Oostende, Belgium, 3 March 2021. VLIZ Special Publication, 87: pp. 95
- Van Landuyt, J.; Kundu, K.; Van Haelst, S.; Parmentier, K.; De Rijcke, M.; Boon, N. (2021). How a WW2 shipwreck still influences the surrounding sediment 70 years later, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 3 March 2021. VLIZ Special Publication, 85: pp. 21
- Devriese, L.I.; Pirlet, H.; Nauwynck, H.; Janssen, C.; Boon, N.; Arends, J.B.A.; Maelfait, H.; Rubbens, P.; Vandegehuchte, M.; Verleye, T.; Lescrauwaet, A.-K.; Mees, J. (2020). Fact Check. Wetenschappelijke kennis over het coronavirus SARS-CoV-2 in de context van de Vlaamse stranden. VLIZ Beleidsinformerende Nota's, 2020_003. Vlaams Instituut voor de Zee (VLIZ): Oostende. ISBN 9789492043948. 25 pp.
- Van Landuyt, J. (2020). Cold seep enrichment yields piezotolerant, obligate hydrocarbon degraders, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Oostende, Belgium, 18 March 2020. VLIZ Special Publication, 84: pp. 84
- De Baere, K.; Van Haelst, S.; Luyckx, D.; De Baere, S.; Boon, N.; van Halbeek, S.; Meskens, R.; Willemen, R.; Melchers, R. (2019). Corrosion of steel and other wreckage in the Belgian North Sea, in: Corrosion and Prevention Conference 2019, Melbourne, Australia, 24 - 27 November, 2019.
- García-Timermans, C.; Rubbens, P.; Kerckhof, F.M.; Waegeman, W.; Boon, N. (2019). Fingerprinting microbial communities through flow cytometry and Raman spectroscopy, in: BAGECO 15. 15th Symposium on Bacterial Genetics and Ecology: "Ecosystem drivers in a changing planet", 26–30 May 2019, Lisbon/Portugal. pp. 155
- Taveirne, F. (2018). Enrichment and isolation of deep-sea hydrocarbon degrading microorganisms. Ir Thesis. Ghent University: Ghent. 82 pp.
- Burdorf, L.; Hidalgo-Martinez, S.; van de Velde, S.; Meysman, F.J.R. (2017). Cable bacteria protect coastal waters from toxic nightmares, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Marine Scientist Day. Brugge, Belgium, 3 March 2017. VLIZ Special Publication, 79: pp. 10
- Otalora, P.; Geelhoed, J.; Hidalgo-Martinez, S.; Burdorf, L.; Meysman, F. (2017). Diversity and natural distribution of electricity-generating cable bacteria in the seafloor, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Brugge, Belgium, 3 March 2017. VLIZ Special Publication, 79: pp. 72
- Otálora-Rodríguez, P.; Geelhoed, J.; Hidalgo-Martinez, S.; Burdorf, L.; Meysman, F. (2017). Diversity and natural distribution of electricity-generating cable bacteria in the seafloor. Poster presented at the VLIZ Marine Science Day 3 March 2017. Center for Microbial Ecology and Technology, Ghent University/Department of Analytical, Environmental and Geo-Chemistry, Vrije Universiteit Brussel: Gent, Brussel. 1 poster pp.
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Projecten (13) |
- COCARDE: COld-water CArbonate Reservoir systems in Deep Environments
- Diepzee Archaea en bacteria: microbiële ecologie en functionaliteit in carbonaatophopingen in de Golf van Cadiz
- DISARM: Dumpsites of munitions: Integrated Science Approach to Risk and Management
- Interferentie met quorum sensing ter preventie en bestrijding van infecties in de aquacultuur
- Management van de kwaliteit van zwemwater aan de Belgische kust
- Marine@Ugent: UGent Marine Sciences Center of Excellence
- MICROSYSTEMS: Microbial Diversity and Functionality in Cold-Water Coral Reef Ecosystems
- Natuurlijke en molekulair-genetisch verbeterde biodegradatie van alkylphenol polyethoxylaten (APnEO's) in aquatische milieus
- Perifyton en Biovlok: een geïntegreerd systeem voor de verwijdering van nutriënten en simultane productie van visvoeder in de aquacultuur
- Perifyton: een geïntegreerd systeem voor de verwijdering van nutriënten en simultane productie van visvoeder in de aquacultuur
- PROMICROBE: Microbes as positive actors for more sustainable aquaculture
- SUNLIGHT: Lipid-based, high value products and renewable energy from microalgae
- Verontreiniging met fecale kiemen van strandwater
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Dataset |
- Li, Y.; Schütte, W.; Dekeukeleire, M.; Janssen, C.; Boon, N.; Asselman, J.; Lebeer, S.; Spacova, I.; De Rijcke, M.; Flanders Marine Institute (VLIZ); University of Antwerp; Ghent University: Belgium; (2024): Immune receptor- and transcription factor-stimulatory activity of bacteria and endotoxin in sea spray aerosols on human cells. Marine Data Archive.
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