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Synoicum_adareanum_microbiome
Citatie
Baker BJ. 2020. Synoicum adareanum sampling u/w video Mar 2011 Palmer Station Antarctica doi:10.5061/dryad.gxd2547gw, Dryad Data. https://doi.org/10.15468/aewoib
Contact: Murray, Alison ; Baker, Bill
Toegang tot data
Gearchiveerde data
Beschikbaarheid: CC0 Voor zover mogelijk onder de wet, heeft de persoon, die CC0 toegekend heeft aan deze dataset, afstand gedaan van alle auteurs- en aanverwante rechten.
Beschrijving
The ascidian, S. adareanum, from the Antarctic Peninsula near Anvers Island, is known to produce a bioactive compound, palmerolide A (PalA) that has specific activity to melanoma, a particularly invasive and metastatic form of skin cancer. The combined non-ribosomal peptide-polyketide structure of PalA has similarities to microbially-produced macrolides which motivated this study utilizing culture-dependent and -independent investigations coupled with PalA detection to improve our understanding of the host-associated microbiome and relationship to PalA. Microbiome composition investigations were conducted to describe the microbiome structure and composition of the Antarctic ascidian, Synoicum adareanum. meer

Metadata sets include (1) ascidian sample collections (63 samples) from the Anvers Island archipelago and associated 16S rRNA gene Illumina tag sequence data sets (V3-V4); palmerolide chemistry data was determined for the same set of 63 samples, and is included with the metadata;(2) bacterioplankton sample collections (14 samples) from the Anvers Island archipelago and associated 16S rRNA gene Illumina tag sequence data sets (V3); (3) bacterial isolate 16S rRNA gene sequences (16 isolates, nearly full length 16S RNA gene), cultivated from Synoicum adareanum homogenates.
Scope
Thema's:
Biologie > Invertebraten
Kernwoorden:
Marien/Kust, Bioactive compounds, Metadata, Rrna, PSW, Antarctica, Antarctic Peninsula, Anvers I., Ascidiacea
Geografische spreiding
PSW, Antarctica, Antarctic Peninsula, Anvers I. [Marine Regions]
Taxonomic coverage
Ascidiacea [WoRMS]
Bijdrage door
Desert Research Institute (DRI), meer, data creator
Murray, Alison
University of South Florida (USF), meer, data creator
Baker, Bill
Gerelateerde datasets
Gepubliceerd in:
AntOBIS: Antarctic Ocean Biodiversity Information System, meer
(Gedeeltelijk) opgenomen in:
RAS: Register of Antarctic Species, meer
Dataset status: Gestart
Data type: Meta database
Metadatarecord aangemaakt: 2020-03-16
Informatie laatst gewijzigd: 2020-03-16
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